Hal Archives
04/17/2024
Article
Temporal genomics help in deciphering neutral and adaptive patterns in the contemporary evolution of kelp populations
Journal of Evolutionary Biology , 2024
Lauric Reynes
Louise Fouqueau
D. Aurelle
Stéphane Mauger
Christophe Destombe
Myriam Valero
04/04/2024
Article
French coastal network for carbonate system monitoring: the CocoriCO2 dataset
Earth System Science Data , 2024 , 16 (4) , pp. 1667-1688
Sébastien Petton
Fabrice Pernet
Valérian Le Roy
Matthias Huber
Sophie Martin
Éric Macé
Yann Bozec
Stéphane Loisel
Peggy Rimmelin-Maury
Émilie Grossteffan
et al.
04/01/2024
Article
A single coelomic cell type is involved in both immune and respiratory functions of the coastal bioindicator annelid: Capitella C-Channel1 from the English Channel
Developmental and Comparative Immunology , 2024 , 153 , pp. 105132
Céline Boidin-Wichlacz
Ann Andersen
Nathalie Jouy
Aurélie Tasiemski
Stephane Hourdez
03/15/2024
Article
Holocarpic oomycete parasites of red algae are not Olpidiopsis, but neither are they all <i>Pontisma or Sirolpidium</i> (Oomycota)
Algae , 2024 , 39 (1) , pp. 43-50
Giuseppe C Zuccarello
Claire M M Gachon
Yacine Badis
Pedro Murúa
Andrea Garvetto
Gwang Hoon Kim
03/01/2024
Article
Target fishing reveals PfPYK-1 and PfRab6 as potential targets of an antiplasmodial 4-anilino-2-trichloromethylquinazoline hit compound
Bioorganic and Medicinal Chemistry , 2024 , 102 , pp. 117654
C. Kieffer
N. Primas
S. Hutter
A. Merckx
L. Reininger
S. Bach
S. Ruchaud
F. Gaillard
M. Laget
D. Amrane
et al.
02/16/2024
Article
Differential acclimation kinetics of the two forms of type IV chromatic acclimaters occurring in marine Synechococcus cyanobacteria
Frontiers in Microbiology , 2024 , 15 , pp. 1349322
Louison Dufour
Laurence Garczarek
Bastian Gouriou
Julia Clairet
Morgane Ratin
Frédéric Partensky
02/13/2024
Article
The global genetic diversity of planktonic foraminifera reveals the structure of cryptic speciation in plankton
Biological Reviews , 2024
Raphaël Morard
Kate Darling
Agnes Weiner
Christiane Hassenrück
Chiara Vanni
Tristan Cordier
Nicolas Henry
Mattia Greco
Nele Vollmar
Tamara Milivojevic
et al.
01/22/2024
Article
Phage-inducible chromosomal minimalist islands (PICMIs), a novel family of small marine satellites of virulent phages,Îlots chromosomiques minimalistes induits par les phages (PICMI), une nouvelle famille de petits satellites marins de phages viru...
Nature Communications , 2024 , 15 (1) , pp. 664
Rubén Barcia-Cruz
David Goudenège
Jorge Moura de Sousa
Damien Piel
Martial Marbouty
Eduardo Rocha
Frédérique Le Roux
01/19/2024
Preprint, Working Paper
The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics
Ann M Mc Cartney
Giulio Formenti
Alice Mouton
Diego de Panis
Luísa S Marins
Henrique G Leitão
Genevieve Diedericks
Joseph Kirangwa
Marco Morselli
Judit Salces-Ortiz
et al.
01/16/2024
Article
On the influence of bed roughness on saltation in inertial regime
Earth Surface Processes and Landforms , 2024 , 49 (4) , pp. 1303-1315
Gaspard Minster
France Floc'H
Alexandre Valance
Nicolas Le Dantec
Amandine Nicolle
Benoit Zerr
01/01/2024
Article
On the specific status of eastern Mediterranean Dendrophyllia corals (Cnidaria, Anthozoa): Genetic characterization and speciation scenarios
Zoologica Scripta , 2024 , 53 (2) , pp. 235-247
Didier Aurelle
Anne Haguenauer
Chloé Blaise
Lauric Reynes
Sophie Arnaud-Haond
Joana Boavida
Cédric Cabau
Christophe Klopp
Tomas Lundalv
Camille Noûs
et al.
01/01/2024
Article
A step towards measuring connectivity in the deep sea: elemental fingerprints of mollusk larval shells discriminate hydrothermal vent sites
Biogeosciences , 2024 , 21 (1) , pp. 145-160
Vincent Mouchi
Christophe Pécheyran
Fanny Claverie
Cécile Cathalot
Marjolaine Matabos
Yoan Germain
Olivier Rouxel
Didier Jollivet
Thomas Broquet
Thierry Comtet
01/01/2024
Article
Reproductive biology and population structure of three hydrothermal gastropods (Lepetodrilus schrolli, L. fijiensis and Shinkailepas tollmanni) from the South West Pacific back-arc basins
Marine Biology , 2024 , 171 (1) , pp. 31 (23p.)
Camille Poitrimol
Marjolaine Matabos
Alicia Veuillot
Annah Ramière
Thierry Comtet
Cedric Boulart
Cecile Cathalot
Éric Thiébaut
01/01/2024
Article
From reproductive behaviour to responses to predators: Ocean acidification does not impact the behaviour of an herbivorous marine gastropod
Science of the Total Environment , 2024 , 907 , pp. 167526
Sabine Roussel
Manon Coheleach
Sophie Martin
Rob Day
Aicha Badou
Sylvain Huchette
Philippe Dubois
Arianna Servili
Fanny Gaillard
Stéphanie Auzoux-Bordenave
01/01/2024
Article
Physiological differences among cryptic species of the Mediterranean crustose coralline alga Lithophyllum stictiforme (Corallinales, Rhodophyta)
European Journal of Phycology , 2024
Sophie Martin
Virgile Calvert
Anne Chenuil
12/15/2023
Preprint, Working Paper
Long-term survey of intertidal rocky shore macrobenthic community metabolism and structure after primary succession
Aline Migné
François Bordeyne
D Davoult
12/01/2023
Article
Host transcriptomic plasticity and photosymbiotic fidelity underpin $Pocillopora$ acclimatization across thermal regimes in the Pacific Ocean
Nature Communications , 2023 , 14 , pp. 3056
Eric J Armstrong
Julie Lê-Hoang
Quentin Carradec
Jean-Marc Aury
Benjamin Noel
Benjamin C C Hume
Christian R Voolstra
Julie Poulain
Caroline Belser
David A Paz-García
et al.
12/01/2023
Article
Carrageenan biosynthesis in red algae: A review
The Cell Surface , 2023 , 9 , pp. 100097
Antonin Chevenier
Diane Jouanneau
Elizabeth Ficko-Blean
12/01/2023
Article
Differences in carbonate chemistry up-regulation of long-lived reef-building corals
Scientific Reports , 2023 , 13 (1) , pp. 11589
Marine Canesi
Eric Douville
Paolo Montagna
Marco Taviani
Jarosław Stolarski
Louise Bordier
Arnaud Dapoigny
Gninwoyo Eric Hermann Coulibaly
Anne-Catherine Simon
Mathieu Agelou
et al.
12/01/2023
Article
Diversity of the Pacific Ocean coral reef microbiome
Nature Communications , 2023 , 14 (1) , pp. 3039
Pierre Galand
Hans-Joachim Ruscheweyh
Guillem Salazar
Corentin Hochart
Nicolas Henry
Benjamin Hume
Pedro Oliveira
Aude Perdereau
Karine Labadie
Caroline Belser
et al.
12/01/2023
Article
Endogenous viral elements reveal associations between a non-retroviral RNA virus and symbiotic dinoflagellate genomes
Communications Biology , 2023 , 6 (1) , pp. 566
Alex Veglia
Kalia Bistolas
Christian Voolstra
Benjamin Hume
Hans-Joachim Ruscheweyh
Serge Planes
Denis Allemand
Emilie Boissin
Patrick Wincker
Julie Poulain
et al.
12/01/2023
Article
Top abundant deep ocean heterotrophic bacteria can be retrieved by cultivation
ISME Communications , 2023 , 3 (1)
Isabel Sanz-Sáez
Pablo Sánchez
Guillem Salazar
Shinichi Sunagawa
Colomban de Vargas
Chris Bowler
Matthew Sullivan
Patrick Wincker
Eric Karsenti
Carlos Pedrós-Alió
et al.
11/17/2023
Article
Global perspective of environmental distribution and diversity of Perkinsea (Alveolata) explored by a meta-analysis of eDNA surveys
Scientific Reports , 2023 , 13 (1) , pp. 20111
Sebastian Metz
Sarah Itoïz
Aleix Obiol
Evelyne Derelle
Ramon Massana
Cédric Berney
Colomban de Vargas
Philippe Soudant
Adam Monier
Aurélie Chambouvet
11/01/2023
Article
Quinazoline-based VEGFR-2 inhibitors as potential anti-angiogenic agents: A contemporary perspective of SAR and molecular docking studies
European Journal of Medicinal Chemistry , 2023 , 259 , pp. 115626
Mahfam Moradi
Alireza Mousavi
Zahra Emamgholipour
Johanna Giovannini
Setareh Moghimi
Fariba Peytam
Amin Honarmand
Stéphane Bach
Alireza Foroumadi
10/26/2023
Preprint, Working Paper
Novel laminarin-binding CBMs in multimodular proteins of marine Bacteroidota feature prominently in phytoplankton blooms
Marie-Katherin Zühlke
Elizabeth Ficko-Blean
Daniel Bartosik
Nicolas Terrapon
Alexandra Jeudy
Murielle Jam
Fengqing Wang
Norma Welsch
Robert Larocque
Diane Jouanneau
et al.
10/13/2023
Article
Maintaining beneficial alga-associated bacterial communities under heat stress: Insights from controlled co-culture experiments using antibiotic-resistant bacterial strains
FEMS Microbiology Ecology , 2023 , 99 (12) , pp. fiad130
Elham Karimi
Simon Dittami
10/06/2023
Article
Adverse effects of delta‐9‐tetrahydrocannabinol on sickle red blood cells
American Journal of Hematology , 2023 , 98 (12)
Aline Hatem
Sofia Esperti
Nicoletta Murciano
Min Qiao
Maria Giustina Rotordam
Nadine Becker
Elie Nader
Felix Maurer
Laurent Pérès
Guillaume Bouyer
et al.
10/01/2023
Article
Long‐term population decline of a genetically homogeneous continental‐wide top Arctic predator
Ibis , 2023 , 165 (4) , pp. 1251-1266
Marianne Gousy-Leblanc
Jean‐françois Therrien
Thomas Broquet
Delphine Rioux
Nadine Curt-Grand-Gaudin
Nathalie Tissot
Sophie Tissot
Ildiko Szabo
Laurie Wilson
Jack Evans
et al.
09/08/2023
Article
Asymmetric dimerization in a transcription factor superfamily is promoted by allosteric interactions with DNA
Nucleic Acids Research , 2023 , 51 (16) , pp. 8864-8879
Abdul Kareem Mohideen Patel
Pierre Vilela
Tajith Baba Shaik
Alastair G Mcewen
Isabelle Hazemann
Karl Brillet
Eric Ennifar
Ali Hamiche
Gabriel V Markov
Vincent Laudet
et al.
09/02/2023
Article
Aldehyde perception induces specific molecular responses in Laminaria digitata and affects algal consumption by a specialist grazer
Plant Journal , 2023
Qikun Xing
Léa Cabioch
Antoine Desrut
Gildas Le Corguillé
Sylvie Rousvoal
Laurence Dartevelle
Elodie Rolland
Yann Guitton
Philippe Potin
Gabriel V Markov
et al.
08/28/2023
Preprint, Working Paper
Workflow for SNP genotyping using the Hi-Plex method v2
Anne-Laure Besnard
Daniel J. Park
Bernard J.
Fleur M.A. Hammet
Sophie Michon-Coudouel
Marine Biget
Stacy A. Krueger-Hadfield
Stéphane Mauger
Eric J. Petit
08/23/2023
Article
Beyond the limits of the unassigned protist microbiome: inferring large-scale spatio-temporal patterns of marine parasites
ISME Communications , 2023 , 3 (16)
Iris Rizos
Pavla Debeljak
Thomas Finet
Dylan Klein
Sakina-Dorothée Ayata
Fabrice Not
Lucie Bittner
08/19/2023
Article
Inter-comparison of marine microbiome sampling protocols
ISME Communications , 2023 , 3 (1) , pp. 84
Francisco Pascoal
Maria Paola Tomasino
Roberta Piredda
Grazia Marina Quero
Luís Torgo
Julie Poulain
Pierre E. Galand
Jed A Fuhrman
Alex Mitchell
Tinkara Tinta
et al.
07/15/2023
Article
Differential global distribution of marine picocyanobacteria gene clusters reveals distinct niche-related adaptive strategies
The International Society of Microbiologial Ecology Journal , 2023 , 17 (5) , pp. 720-732
Hugo Doré
Ulysse Guyet
Jade Leconte
Gregory Farrant
Benjamin Alric
Morgane Ratin
Martin Ostrowski
Mathilde Ferrieux
Loraine Brillet-Guéguen
Mark Hoebeke
et al.
07/13/2023
Article
Taxonomic surrogates for long-term macrobenthic community monitoring: an application with community trajectory analysis
Marine Ecology Progress Series , 2023 , 714 , pp. 105-111
C Toumi
Olivier Gauthier
É Thiébaut
C Guedes
J Grall
07/06/2023
Article
Expression of 20 SCPP genes during tooth and bone mineralization in Senegal bichir
Development Genes and Evolution , 2023
S Delgado
Ma Fernandez-Trujillo
G Houée
J Silvent
X Liu
Erwan Corre
Jy Sire
07/06/2023
Preprint, Working Paper
Ionic permeabilities of the human red blood cell: insights of a simple mathematical model
Stéphane Égée
Marie Postel
Benoît Sarels
07/03/2023
Article
The Rhodoexplorer Platform for Red Algal Genomics and Whole-Genome Assemblies for Several Gracilaria Species
Genome Biology and Evolution , 2023 , 15 (7) , pp. evad124
Agnieszka Lipinska
Stacy Krueger-Hadfield
Olivier Godfroy
Simon Dittami
Lígia Ayres-Ostrock
Guido Bonthond
Loraine Brillet-Guéguen
Susana Coelho
Erwan Corre
Guillaume Cossard
et al.
06/30/2023
Article
Eukaryotic algal community composition in tropical environments from solar salterns to the open sea
Frontiers in Marine Science , 2023 , 10
Charlotte Eckmann
Jessica Eberle
Fabian Wittmers
Susanne Wilken
Kristin Bergauer
Camille Poirier
Marguerite Blum
Kriste Makareviciute-Fichtner
Valeria Jimenez
Charles Bachy
et al.
06/27/2023
Article
Transcriptional Mechanisms of Thermal Acclimation in Prochlorococcus
mBio , 2023 , 14 (3)
Laura Alonso-Sáez
Antonio Palacio
Ana Cabello
Semidán Robaina-Estévez
José González
Laurence Garczarek
Ángel López-Urrutia
06/26/2023
Article
Causes and consequences of linkage disequilibrium among transposable elements within eukaryotic genomes
Genetics , 2023 , 224 (2)
Denis Roze
06/25/2023
Article
The diversification of the antimicrobial peptides from marine worms is driven by environmental conditions
Science of the Total Environment , 2023 , 879 , pp. 162875
Renato Bruno
Céline Boidin-Wichlacz
Oleg Melnyk
Daniela Zeppilli
Celine Landon
Frédéric Thomas
Marie-Anne Cambon-Bonavita
Mickaël Lafond
Kamel Mabrouk
François Massol
et al.
06/05/2023
Comm. dans un congrès
Functional trait-based approaches as a common framework for aquatic ecologists : Synthesis and recent results.
, 2023 , 66 (3) , pp. 965-994
Séverine Martini
Floriane Larras
Aurélien Boyé
Emile Faure
Nicole Aberle
Philippe Archambault
Lise Bacouillard
Beatrix E Beisner
Lucie Bittner
Emmanuel Castella
et al.
06/02/2023
Article
Zobellia alginiliquefaciens sp. nov., a novel member of the flavobacteria isolated from the epibiota of the brown alga Ericaria zosteroides (C. Agardh) Molinari & Guiry 2020
International Journal of Systematic and Evolutionary Microbiology , 2023 , 73 (6) , pp. 005924
Tristan Barbeyron
Nolwen Le Duff
Eric Duchaud
François Thomas
06/01/2023
Article
Bacterial symbiont diversity in Arctic seep Oligobrachia siboglinids
Animal Microbiome , 2023 , 5 (1) , pp. 30
Arunima Sen
Gwenn Tanguy
Pierre E Galand
Ann C Andersen
Stéphane Hourdez
05/26/2023
Article
Natural iron fertilization by shallow hydrothermal sources fuels diazotroph blooms in the ocean
Science , 2023 , 380 (6647) , pp. 812-817
Sophie Bonnet
Cécile Guieu
Vincent Taillandier
Cédric Boulart
Pascale Bouruet-Aubertot
Frédéric Gazeau
Carla Scalabrin
Matthieu Bressac
Angela Knapp
Yannis Cuypers
et al.
05/02/2023
Article
Identification of Novel Compounds Inhibiting the Kinase Activity of the CDK5/p25 Complex via Direct Binding to p25
Biochemistry , 2023 , 62 (9) , pp. 1452-1463
Riheb Jabeur
Caroline Corbel
Pascal Loyer
Annabelle Le Parc
Adelaide Le Grand
Arnaud Comte
Stéphane Bach
Gwenaëlle André-Leroux
Olivier Sire
Hedi Ben Mansour
et al.
04/26/2023
Article
Data quality control considerations in multivariate environmental monitoring: experience of the French coastal network SOMLIT
Frontiers in Marine Science , 2023 , 10 , pp. 12
Elsa Breton
Nicolas Savoye
Peggy Rimmelin-Maury
Benoit Sautour
Eric Goberville
Arnaud Lheureux
Thierry Cariou
Sophie Ferreira
Hélène Agogué
Samir Alliouane
et al.
04/13/2023
Preprint, Working Paper
Genetic sex determination in three closely related hydrothermal vent gastropods, including one species with intersex individuals
J Castel
F Pradillon
V Cueff
G Leger
C Daguin-Thiébaut
S Ruault
J Mary
S Hourdez
D Jollivet
T. Broquet
04/12/2023
Article
Coupling large-spatial scale larval dispersal modelling with barcoding to refine the amphi-Atlantic connectivity hypothesis in deep-sea seep mussels
Frontiers in Marine Science , 2023 , 10 , pp. 1122124
Elodie Portanier
Amandine Nicolle
Willi Rath
Lorraine Monnet
Gregoire Le Goff
Anne-Sophie Le Port
Claire Daguin-Thiébaut
Cheryl L Morrison
Marina R Cunha
Melissa Betters
et al.
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