Hal Archives
01/01/2022
Article
metaPR 2 : A database of eukaryotic 18S rRNA metabarcodes with an emphasis on protists
Molecular Ecology Resources , 2022
Daniel Vaulot
Clarence Wei Hung Sim
Denise Ong
Bryan Teo
Charlie Biwer
Mahwash Jamy
Adriana Lopes dos Santos
01/01/2022
Article
Carbon and nitrogen uptake through photosynthesis and feeding by photosymbiotic Acantharia
Open Research Europe , 2022 , 2 , pp. 120
Joost Samir Mansour
Per Juel Hansen
Cédrix Leroux
Fabrice Not
01/01/2022
Article
Comparative Thermophysiology of Marine Synechococcus CRD1 Strains Isolated From Different Thermal Niches in Iron-Depleted Areas
Frontiers in Microbiology , 2022 , 13 , pp. 893413
Mathilde Ferrieux
Louison Dufour
Hugo Doré
Morgane Ratin
Audrey Guéneuguès
Léo Chasselin
Dominique Marie
Fabienne Rigaut-Jalabert
Florence Le Gall
Théo Sciandra
et al.
01/01/2022
Article
Balanced Polymorphism at the Pgm-1 Locus of the Pompeii Worm Alvinella pompejana and Its Variant Adaptability Is Only Governed by Two QE Mutations at Linked Sites
Genes , 2022 , 13 (2) , pp. 206
Alexis Bioy
Anne-Sophie Le Port
Emeline Sabourin
Marie Verheye
Patrice Piccino
Baptiste Faure
Stephane Hourdez
Jean Mary
Didier Jollivet
01/01/2022
Article
Genomic patterns of divergence in the early and late steps of speciation of the deep-sea vent thermophilic worms of the genus Alvinella
BMC Ecology and Evolution , 2022 , 22 , pp. 106
Camille Thomas-Bulle
Denis Bertrand
Niranjan Nagarajan
Richard R Copley
Erwan Corre
Stephane Hourdez
Éric Bonnivard
Adam Claridge-Chang
Didier Jollivet
01/01/2022
Article
Inter-Specific Genetic Exchange Despite Strong Divergence in Deep-Sea Hydrothermal Vent Gastropods of the Genus Alviniconcha
Genes , 2022 , 13 (6) , pp. 985
Jade Castel
Stéphane Hourdez
Florence Pradillon
Claire Daguin-Thiébaut
Marion Ballenghien
Stéphanie Ruault
Erwan Corre
Adrien Tran Lu Y
Jean Mary
Pierre-Alexandre Gagnaire
et al.
01/01/2022
Article
Multiple photolyases protect the marine cyanobacterium Synechococcus from ultraviolet radiation
mBio , 2022 , 13 (4) , pp. 01511-22
Allissa Haney
Joseph Sanfilippo
Laurence Garczarek
Frédéric Partensky
David Kehoe
01/01/2022
Article
Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems
eLife , 2022
Daniel J Richter
Romain Watteaux
Thomas Vannier
Jade Leconte
Paul Frémont
Gabriel Reygondeau
Nicolas Maillet
Nicolas Henry
Gaëtan Benoit
Antonio Fernandez-Guerra
et al.
01/01/2022
Article
Viability, efficiency, resilience and equity: using very diverse indicators to deal with uncertainties of future events
Environmental Science & Policy , 2022 , 138 , pp. 56-75
Sophie Martin
Katrin Erdlenbruch
Isabelle Alvarez
Sylvie Huet
Charline Smadi
01/01/2022
Article
Swarm v3: towards tera-scale amplicon clustering
Bioinformatics , 2022 , 38 (1) , pp. 267-269
Frédéric Mahé
Lucas Czech
Alexandros Stamatakis
Christopher Quince
Colomban de Vargas
Micah Dunthorn
Torbjørn Rognes
01/01/2022
Article
Introgression between highly divergent sea squirt genomes: an adaptive breakthrough?
Peer Community Journal , 2022 , 2 , pp. e54
Christelle Fraïsse
Alan Le Moan
Camille Roux
Guillaume Dubois
Claire Daguin-Thiébaut
Pierre-Alexandre Gagnaire
Frédérique Viard
Nicolas Bierne
01/01/2022
Article
EukProt: A database of genome-scale predicted proteins across the diversity of eukaryotes
Peer Community Journal , 2022 , 2 , pp. e56
Daniel Richter
Cédric Berney
Jürgen Strassert
Yu-Ping Poh
Emily Herman
Sergio Muñoz-Gómez
Jeremy Wideman
Fabien Burki
Colomban de Vargas
01/01/2022
Article
Coping with poachers in European stalked barnacle fisheries
Marine Policy , 2022 , 135 , pp. 104826
Katja Geiger
Antonella Rivera
Alba Aguión
Jorge Álvarez
Julio Arrontes
yaisel Juan Borrell
Teresa Cruz
Dominique Davoult
Jesús Dubert
Marieke Feis
et al.
01/01/2022
Article
The phycoerythrobilin isomerization activity of MpeV in Synechococcus sp. WH8020 is prevented by the presence of a histidine at position 141 within its phycoerythrin-I β-subunit substrate
Frontiers in Microbiology , 2022 , 13 , pp. 1011189
Lyndsay A Carrigee
Jacob P Frick
Xindi Liu
Jonathan A Karty
Jonathan C Trinidad
Irin P Tom
Xiaojing Yang
Louison Dufour
Frédéric Partensky
Wendy M. Schluchter
01/01/2022
Article
N2 fixation in the Mediterranean Sea related to the composition of the diazotrophic community, and impact of dust under present and future environmental conditions.
Biogeosciences , 2022 , 19 (2) , pp. 415-435
Céline Ridame
Julie Dinasquet
Søren Hallstrøm
Estelle Bigeard
Lasse Riemann
France van Wambeke
Matthieu Bressac
Elvira Pulido-Villena
Vincent Taillandier
Fréderic Gazeau
et al.
12/09/2021
Article
Low Transcriptomic Plasticity of Antarctic Giant Isopod Glyptonotus antarcticus Juveniles Exposed to Acute Thermal Stress
Frontiers in Marine Science , 2021 , 8
Marcelo González-Aravena
Rodolfo Rondon
Alejandro Font
César A Cárdenas
Jean-yves Toullec
Erwan Corre
Kurt Paschke
12/01/2021
Article
Macroscale patterns of oceanic zooplankton composition and size structure
Scientific Reports , 2021 , 11 (1)
Manoela Brandão
Fabio Benedetti
Séverine Martini
Yawouvi Dodji Soviadan
Jean-Olivier Irisson
Jean-Baptiste Romagnan
Amanda Elineau
Corinne Desnos
Laëtitia Jalabert
Andrea Freire
et al.
12/01/2021
Article
Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp
BMC Biology , 2021 , 19 (1)
Sarah Farhat
Phuong Le
Ehsan Kayal
Benjamin Noel
Estelle Bigeard
Erwan Corre
Florian Maumus
Isabelle Florent
Adriana A. Alberti
Jean-Marc Aury
et al.
12/01/2021
Article
Annual phytoplankton dynamics in coastal waters from Fildes Bay, Western Antarctic Peninsula
Scientific Reports , 2021 , 11 (1) , pp. 1368
Nicole Trefault
Rodrigo de La Iglesia
Mario Moreno-Pino
Adriana Lopes dos Santos
Catherine Gérikas Ribeiro
Génesis Parada-Pozo
Antonia Cristi
Dominique Marie
Daniel Vaulot
12/01/2021
Article
High and specific diversity of protists in the deep-sea basins dominated by diplonemids, kinetoplastids, ciliates and foraminiferans
Communications Biology , 2021 , 4 (1) , pp. 501
Alexandra Schoenle
Manon Hohlfeld
Karoline Hermanns
Frédéric Mahé
Colomban de Vargas
Frank Nitsche
Hartmut Arndt
11/29/2021
Preprint, Working Paper
Seasonal temporal dynamics of marine protists communities in tidally mixed coastal waters
Mariarita Caracciolo
Fabienne Rigaut-Jalabert
Sarah Romac
Frédéric Mahé
Samuel Forsans
Jean-Philippe Gac
Laure Arsenieff
Maxime Manno
Samuel Chaffron
Thierry Cariou
et al.
11/19/2021
Preprint, Working Paper
Rocky tidal pools: carbonate chemistry, diurnal variability and calcifying organisms in future high-CO2 conditions
Narimane Dorey
Sophie Martin
Lester Kwiatkowski
11/15/2021
Article
Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean
Nature Microbiology , 2021 , 6 (12) , pp. 1561-1574
Marta Royo-Llonch
Pablo Sánchez
Clara Ruiz-González
Guillem Salazar
Carlos Pedrós-Alió
Marta Sebastián
Karine Labadie
Lucas Paoli
Federico M. Ibarbalz
Lucie Zinger
et al.
11/08/2021
Article
Humoral response to a third injection of BNT162b2 vaccine in patients on maintenance haemodialysis
Clinical Kidney Journal , 2021 , 14 (11) , pp. 2349-2355
Marine Dekervel
Nicolas Henry
Massimo Torreggiani
Lise-Marie Pouteau
Jean-Paul Imiela
Chloé Mellaza
Anne-Sophie Garnier
Amaury Dujardin
Marine Asfar
Alexandra Ducancelle
et al.
11/01/2021
Comm. dans un congrès
Reconstitution de provenance de coquilles d'huîtres archéologiques à partir de l'étude de la composition chimique élémentaire et isotopique
Marie Pesnin
Vincent Mouchi
Vianney Forest
Catherine Dupont
Laurent Emmanuel
11/01/2021
Article
Bioluminescence and Photoreception in Unicellular Organisms: Light-Signalling in a Bio-Communication Perspective
International Journal of Molecular Sciences , 2021 , 22 (21) , pp. 11311
Youri Timsit
Magali Lescot
Martha Valiadi
Fabrice Not
11/01/2021
Article
Combined effects of ocean warming and acidification on the larval stages of the European abalone Haliotis tuberculata
Marine Pollution Bulletin , 2021 , pp. 113131
Javid Kavousi
Sabine Roussel
Sophie Martin
Fanny Gaillard
Aicha Badou
Carole Di Poi
Sylvain Huchette
Philippe Dubois
Stéphanie Auzoux-Bordenave
11/01/2021
Article
Greater functional similarity in mobile compared to sessile assemblages colonizing artificial coastal habitats
Marine Pollution Bulletin , 2021 , 172 , pp. 112844
Naily Nashira Figueroa
Antonio Brante
Frédérique Viard
Jean-Charles Leclerc
10/29/2021
Article
Comparative genomic and transcriptomic analyses of transposable elements in polychaetous annelids highlight LTR retrotransposon diversity and evolution
Mobile DNA , 2021 , 12 (1) , pp. 24
Jonathan Filée
Sarah Farhat
Dominique Higuet
Laure Teysset
Dominique Marie
Camille Thomas-Bulle
Stephane Hourdez
Didier Jollivet
Eric Bonnivard
10/27/2021
Poster
Genomic adaptation of Pelagomonas calceolata to temperate iron-poor oceans revealed by a chromosome-scale assembled genome
Nina Guérin
Quentin Carradec
Marta Ciccarella
Elisa Flamant
Sophie Mangenot
Benjamin Istace
Benjamin Noel
Sarah Romac
Charles Bachy
Eric Pelletier
et al.
10/06/2021
Article
Author Correction: Macroscale patterns of oceanic zooplankton composition and size structure
Scientific Reports , 2021 , 11 (1) , pp. 20226
Manoela Brandão
Fabio Benedetti
Séverine Martini
Yawouvi Dodji Soviadan
Jean-Olivier Irisson
Jean-Baptiste Romagnan
Amanda Elineau
Corinne Desnos
Laëtitia Jalabert
Andrea Freire
et al.
10/01/2021
Article
Structure-Based Functional Analysis of a Hormone Belonging to an Ecdysozoan Peptide Superfamily: Revelation of a Common Molecular Architecture and Residues Possibly for Receptor Interaction
International Journal of Molecular Sciences , 2021 , 22 (20) , pp. 11142
Yun-Ru Chen
Nai-Wan Hsiao
Yi-Zong Lee
Shiau-Shan Huang
Chih-Chun Chang
Jyuan-Ru Tsai
Hui-Chen Lin
Jean-Yves Toullec
Chi-Ying Lee
Ping-Chiang Lyu
09/22/2021
Preprint, Working Paper
N<sub>2</sub> fixation in the Mediterranean Sea related to the composition of the diazotrophic community, and impact of dust under present and future environmental conditions
, 2021 , pp. 415–435
Céline Ridame
Julie Dinasquet
Søren Hallstrøm
Estelle Bigeard
Lasse Riemann
France van Wambeke
Matthieu Bressac
Elvira Pulido-Villena
Vincent Taillandier
Frédéric Gazeau
et al.
09/21/2021
Autre document
Construction of individual ddRAD libraries v1
Claire Daguin Thiebaut
Stephanie Ruault
Charlotte Roby
Thomas Broquet
Frédérique Viard
Alan Brelsford
09/13/2021
Article
Marine Synechococcus Picocyanobacteria: Light Utilization Across Latitudes
Proceedings of the National Academy of Sciences of the United States of America , 2021 , 118 (38) , pp. e2111300118
Christophe Six
Morgane Ratin
Dominique Marie
Erwan Corre
09/12/2021
Poster
Hemoglobins are a keystone adaptation for deep-sea hydrothermal vent scaleworms
Victor Le Layec
Stephane Hourdez
09/07/2021
Article
Does the environmental history of mussels have an effect on the physiological response to additional stress under experimental conditions?
Science of the Total Environment , 2021 , 806 (Part 1) , pp. 149925
Isabelle Boutet
Camille Lacroix
Simon Devin
Arnaud Tanguy
Dario Moraga
Michel Auffret
09/01/2021
Article
Acid–base balance in the hæmolymph of European abalone (Haliotis tuberculata) exposed to CO2-induced ocean acidification
Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology , 2021 , 259 , pp. 110996
Stéphanie Auzoux-Bordenave
Sandra Chevret
Aïcha Badou
Sophie Martin
Sarah Di Giglio
Philippe Dubois
09/01/2021
Article
The Chemistry of Hyperalkaline Springs in Serpentinizing Environments: 1. The Composition of Free Gases in New Caledonia Compared to Other Springs Worldwide
Journal of Geophysical Research: Biogeosciences , 2021 , 126 (9)
Christophe Monnin
Marianne Quéméneur
Roy Price
Julie Jeanpert
Pierre Maurizot
Cédric Boulart
Jean‐pierre Donval
Bernard Pelletier
09/01/2021
Article
Acid-base balance in the haemolymph of European abalone (Haliotis tuberculata) exposed to CO2-induced ocean acidification
Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology , 2021 , 259 , pp. 110996
Stéphanie Auzoux-Bordenave
Sandra Chevret
Aïcha Badou
Sophie Martin
Sarah Di Giglio
Philippe Dubois
08/02/2021
Preprint, Working Paper
Dynamics of Fucus serratus thallus photosynthesis and community primary production during emersion across seasons: canopy dampening and biochemical acclimation
Aline Migné
Gwendoline Duong
Dominique Menu
Dominique Davoult
François Gévaert
08/01/2021
Article
Hemiselmis aquamarina sp. nov. (Cryptomonadales, Cryptophyceae), A Cryptophyte with A Novel Phycobiliprotein Type (Cr-PC 564)
Protist , 2021 , 172 (4) , pp. 125832
Karoline Magalhães
Adriana Lopes Santos
Daniel Vaulot
Mariana Cabral Oliveira
07/12/2021
Article
Dinophyceae can use exudates as weapons against the parasite Amoebophrya sp. (Syndiniales)
ISME Communications , 2021 , 1 (1)
Marc Long
Dominique Marie
Jeremy Szymczak
Jordan Toullec
Estelle Bigeard
Marc Sourisseau
Mickael Le Gac
Laure Guillou
Cécile Jauzein
07/12/2021
Article
pr2-primers: an 18S rRNA primer database for protists
Molecular Ecology Resources , 2021
Daniel Vaulot
Stefan Geisen
Frédéric Mahé
David Bass
07/01/2021
Article
A Morpho-molecular Perspective on the Diversity and Evolution of Spumellaria (Radiolaria)
Protist , 2021 , 172 (3) , pp. 125806
Miguel Sandin
Tristan Biard
Sarah Romac
Luis O'Dogherty
Noritoshi Suzuki
Fabrice Not
06/01/2021
Article
Physiology of maerl algae: Comparison of inter‐ and intraspecies variations
Journal of Phycology , 2021 , 57 (3) , pp. 831-848
Zujaila Nohemy Qui‐minet
Dominique Davoult
Jacques Grall
Coralie Delaunay
Christophe Six
Thierry Cariou
Sophie Martin
05/26/2021
Article
Eco-Evolutionary Perspectives on Mixoplankton
Frontiers in Marine Science , 2021 , 8
Joost Samir Mansour
Konstantinos Anestis
05/21/2021
Article
Global data on earthworm abundance, biomass, diversity and corresponding environmental properties
Scientific Data , 2021 , 8 (1) , pp. 136
Helen R. P. Phillips
Elizabeth M. Bach
Marie L. C. Bartz
Joanne M. Bennett
Rémy Beugnon
Maria J. I. Briones
George G. Brown
Olga Ferlian
Konstantin B. Gongalsky
Carlos A. Guerra
et al.
05/19/2021
Article
Local flexibility in feeding behaviour and contrasting microhabitat use of an omnivore across latitudes
Oecologia , 2021 , (196) , pp. 441-453
Jean-Charles Leclerc
Thibaut de Bettignies
Florian de Bettignies
Hartvig Christie
João N Franco
Cédric Leroux
Dominique Davoult
Morten F Pedersen
Karen Filbee-Dexter
Thomas Wernberg
05/01/2021
Article
Looking for diversity in all the right places? Genetic diversity is highest in peripheral populations of the reef-building polychaete Sabellaria alveolata
Marine Biology , 2021 , 168 (5)
Flávia Nunes
François Rigal
Stanislas Dubois
Frédérique Viard
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