Hal Archives
03/21/2023
Article
Structural Study of the Cobetia marina Bacteriophage 1 (Carin-1) by Cryo-EM
Journal of Virology , 2023 , pp. e0024823
Alessio d'Acapito
Thomas Roret
Eleftherios Zarkadas
Pierre-Yves Mocaër
Florian Lelchat
Anne-Claire Baudoux
Guy Schoehn
Emmanuelle Neumann
Alessio D’acapito
02/17/2023
Preprint, Working Paper
Beyond the limits of the unassigned protist microbiome: inferring large-scale spatio-temporal patterns of marine parasites
Iris Rizos
Pavla Debeljak
Thomas Finet
Dylan Klein
Sakina-Dorothée Ayata
Fabrice Not
Lucie Bittner
02/03/2023
Preprint, Working Paper
PlanktonScope: Affordable modular imaging platform for citizen oceanography
Thibaut Pollina
Adam Larson
Fabien Lombard
Hongquan Li
Sebastien Colin
Colomban de Vargas
Manu Prakash
02/03/2023
Preprint, Working Paper
No evidence of phago-mixotropy in Micromonas polaris , the dominant picophytoplankton species in the Arctic
Valeria Jimenez
John Burns
Florence Le Gall
Fabrice Not
Daniel Vaulot
02/03/2023
Preprint, Working Paper
Morpho-molecular diversity and evolutionary analyses suggest hidden life styles in Spumellaria (Radiolaria)
Miguel Sandin
Tristan Biard
Sarah Romac
Luis O’dogherty
Noritoshi Suzuki
Fabrice Not
02/03/2023
Preprint, Working Paper
Unveiling hidden eukaryotes: diversity of Endomyxa (Rhizaria) in coastal marine habitats
Cédric Berney
Stefan Ciaghi
Sarah Romac
Frédéric Mahé
Colomban de Vargas
Olivier Jaillon
Martin Kirchmair
David Bass
Sigrid Neuhauser
02/01/2023
Article
Amoebophrya ceratii
Trends in Parasitology , 2023 , 39 (2) , pp. 152-153
Laure Guillou
Jeremy Szymczak
Catharina Alves-De-Souza
01/01/2023
Article
Investigating the risk of non-indigenous species introduction through ship hulls in Chile
Management of Biological Invasions , 2023 , 14 (1) , pp. 156-177
Javier Pinochet
Antonio Brante
Claire Daguin-Thiébaut
Florence Tellier
Frédérique Viard
12/31/2022
Article
Engaging at the science-policy interface as an early-career researcher: experiences and perceptions in biodiversity and ecosystem services research
Ecosystems and People , 2022 , 18 (1) , pp. 397-409
Anna Filyushkina
Hyeonju Ryu
Andrew Kadykalo
Ranjini Murali
C. Sylvie Campagne
Carla-Leanne Washbourne
Sophie Peter
Nada Saidi
Thuan Sarzynski
Paola Fontanella Pisa
et al.
12/20/2022
Article
Global Phylogeography of Marine Synechococcus in Coastal Areas Reveals Strong Community Shifts
mSystems , 2022 , 7 (6)
Hugo Doré
Jade Leconte
Ulysse Guyet
Solène Breton
Gregory Farrant
David Demory
Morgane Ratin
Mark Hoebeke
Erwan Corre
Frances Pitt
et al.
12/20/2022
Article
Global phylogeography of marine $Synechococcus$ in coastal areas reveals strong community shifts
mSystems , 2022 , 7 (6) , pp. ANR- 17-CE02-0014-01
Hugo Doré
Jade Leconte
Ulysse Guyet
Solène Breton
Gregory K Farrant
David Demory
Morgane Ratin
Mark Hoebeke
Erwan Corre
Frances D Pitt
et al.
12/14/2022
Preprint, Working Paper
Long-term population decline of a genetically homogenous continental-wide top Arctic predator
Marianne Gousy-Leblanc
Jean-François Therrien
Thomas Broquet
Delphine Rioux
Nadine Curt-Grand-Gaudin
Nathalie Tissot
Sophie Tissot
Ildiko Szabo
Laurie Wilson
Jack Evans
et al.
12/14/2022
Preprint, Working Paper
Whole-genome phylogeography of the intertidal snail Littorina saxatilis
Sean Stankowski
Zuzanna Zagrodzka
Juan Galindo
Mauricio Montaño-Rendón
Rui Faria
Natalia Mikhailova
April Blakeslee
Einar Arnason
Thomas Broquet
Hernán Morales
et al.
12/01/2022
Article
Comparative biology and ecology of apicomplexans and dinoflagellates: a unique meeting of minds and biology
Trends in Parasitology , 2022 , 38 (12) , pp. 1012-1019
Ross F Waller
Catharina Alves-De-Souza
Phillip Cleves
Jan Janouškovec
Ehsan Kayal
Thomas Krueger
Jeremy Szymczak
Norico Yamada
Laure Guillou
12/01/2022
Article
Marine gregarine genomes reveal the breadth of apicomplexan diversity with a partially conserved glideosome machinery
BMC Genomics , 2022 , 23 (1) , pp. 485
Julie Boisard
Evelyne Duvernois-Berthet
Linda Duval
Joseph Schrével
Laure Guillou
Amandine Labat
Sophie Le Panse
Gérard Prensier
Loïc Ponger
Isabelle Florent
11/16/2022
Preprint, Working Paper
Global observation of plankton communities from space
Hiroto Kaneko
Hisashi Endo
Nicolas Henry
Cédric Berney
Frédéric Mahé
Julie Poulain
Karine Labadie
Odette Beluche
Roy El Hourany
Samuel Chaffron
et al.
11/01/2022
Article
Chromosome‐level reference genome for European flat oyster ( Ostrea edulis L.)
Evolutionary Applications , 2022 , 15 (11) , pp. 1713-1729
Manu Kumar Gundappa
Carolina Peñaloza
Tim Regan
Isabelle Boutet
Arnaud Tanguy
Ross Houston
Tim Bean
Daniel Macqueen
11/01/2022
Article
Chromosomal assembly of the flat oyster ( Ostrea edulis L.) genome as a new genetic resource for aquaculture
Evolutionary Applications , 2022 , 15 (11) , pp. 1730-1748
Isabelle Boutet
Homère Alves Monteiro
Lyam Baudry
Takeshi Takeuchi
Eric Bonnivard
Bernard Billoud
Sarah Farhat
Ricardo Gonzales-Araya
Benoit Salaun
Ann Andersen
et al.
11/01/2022
Article
Responses of early life stages of European abalone (Haliotis tuberculata) to ocean acidification after parental conditioning: Insights from a transgenerational experiment
Marine Environmental Research , 2022 , 181 , pp. 105753
Stéphanie Auzoux-Bordenave
Apolline Ledoux
Sophie Martin
Carole Di Poi
Marc Suquet
Aïcha Badou
Fanny Gaillard
Arianna Servili
Nelly Le Goïc
Sylvain Huchette
et al.
10/28/2022
Preprint, Working Paper
Global phylogeography of marine Synechococcus in coastal areas reveals strikingly different communities than in the open ocean
Hugo Doré
Jade Leconte
Ulysse Guyet
Solène Breton
Gregory Farrant
David Demory
Morgane Ratin
Mark Hoebeke
Erwan Corre
Frances Pitt
et al.
10/14/2022
Article
Stomach content and stable isotope analyses provide complementary insights into the trophic ecology of coastal temperate bentho-demersal assemblages under environmental and anthropogenic pressures
Marine Environmental Research , 2022 , 182 , pp. 105770
Sturbois Anthony
A Cozic
Gauthier Schaal
Nicolas Desroy
Pascal Riera
Olivier Le Pape
P Le Mao
A Ponsero
Alexandre Carpentier
10/10/2022
Article
Siliceous Rhizaria abundances and diversity in the Mediterranean Sea assessed by combined imaging and metabarcoding approaches
Frontiers in Marine Science , 2022 , 9
Natalia Llopis Monferrer
Tristan Biard
Miguel Sandin
Fabien Lombard
Marc Picheral
Amanda Elineau
Lionel Guidi
Aude Leynaert
Paul Tréguer
Fabrice Not
10/05/2022
Article
Contrasted phylogeographic patterns of hydrothermal vent gastropods along South West Pacific: Woodlark Basin, a possible contact zone and/or stepping-stone
PLoS ONE , 2022 , 17 (10) , pp. e0275638
Camille Poitrimol
Éric Thiébaut
Claire Daguin-Thiébaut
Anne-Sophie Le Port
Marion Ballenghien
Adrien Tran Lu Y
Didier Jollivet
Stephane Hourdez
Marjolaine Matabos
10/01/2022
Article
Impact of in Situ Simulated Climate Change on Communities and Non-Indigenous Species: Two Climates, Two Responses
Journal of Chemical Ecology , 2022 , 48 (9-10) , pp. 761-771
Robin Gauff
Christophe D Lejeusne
Stephane Greff
Stephane Loisel
Olivier Bohner
Dominique Davoult
09/26/2022
Article
Diazotrophs are overlooked contributors to carbon and nitrogen export to the deep ocean
ISME Journal , 2022
Sophie Bonnet
Mar Benavides
Frédéric a C Le Moigne
Mercedes Camps
Antoine Torremocha
Olivier Grosso
Céline Dimier
Dina Spungin
Ilana Berman-Frank
Laurence Garczarek
et al.
09/14/2022
Article
An update on dissolved methane distribution in the subtropical North Atlantic Ocean
Ocean Science , 2022 , 18 (5) , pp. 1377-1388
Anna Kolomijeca
Lukas Marx
Sarah Reynolds
Thierry Cariou
Edward Mawji
Cédric Boulart
08/11/2022
Article
Biophysical modelling of larval dispersal and population connectivity of a stalked barnacle: implications for fishery governance
Marine Ecology Progress Series , 2022 , 694 , pp. 105-123
R Nolasco
J Dubert
Jl Acuña
A Aguión
T Cruz
Jn Fernandes
Kj Geiger
D Jacinto
G Macho
D Mateus
et al.
08/09/2022
Article
Diversity and biogeography of planktonic diatoms in Svalbard fjords: The role of dispersal and Arctic endemism in phytoplankton community structuring
Elementa: Science of the Anthropocene , 2022 , 10 (1)
Luka Šupraha
Kerstin Klemm
Sandra Gran-Stadniczeñko
Cora Hörstmann
Daniel Vaulot
Bente Edvardsen
Uwe John
08/01/2022
Article
Planktonic protist diversity across contrasting Subtropical and Subantarctic waters of the southwest Pacific
Progress in Oceanography , 2022 , 206 (7) , pp. 102809
Miguel Sandin
Sarah Romac
Fabrice Not
08/01/2022
Article
Modeling water regulation ecosystem services: A review in the context of ecosystem accounting
Ecosystem Services , 2022 , 56 , pp. 101458
Stoyan Nedkov
Sylvie Campagne
Bilyana Borisova
Petr Krpec
Hristina Prodanova
Ioannis Kokkoris
Desislava Hristova
Solen Le Clec'H
Fernando Santos-Martin
Benjamin Burkhard
et al.
07/22/2022
Article
PlanktoScope: Affordable Modular Quantitative Imaging Platform for Citizen Oceanography
Frontiers in Marine Science , 2022 , 9
Thibaut Pollina
Adam Larson
Fabien Lombard
Hongquan Li
David Le Guen
Sébastien Colin
Colomban de Vargas
Manu Prakash
07/08/2022
Article
Intracellular development and impact of a marine eukaryotic parasite on its zombified microalgal host
ISME Journal , 2022 , 16 (10) , pp. 2348-2359
Johan Decelle
Ehsan Kayal
Estelle Bigeard
Benoit Gallet
Jeremy Bougoure
Peta Clode
Nicole Schieber
Rachel Templin
Elisabeth Hehenberger
Gerard Prensier
et al.
07/01/2022
Article
Phytoplanktonic response to simulated volcanic and desert dust deposition events in the South Indian and Southern Oceans
Limnology and Oceanography , 2022 , 67 (7) , pp. 1537-1553
Carla Geisen
Céline Ridame
Emilie Journet
Pierre Delmelle
Dominique Marie
Claire Lo Monaco
Nicolas Metzl
Rawaa Ammar
Joelle Kombo
Damien Cardinal
07/01/2022
Article
Intra‐genomic rRNA gene variability of Nassellaria and Spumellaria (Rhizaria, Radiolaria) assessed by Sanger, MinION and Illumina sequencing
Environmental Microbiology , 2022 , 24 (7) , pp. 2979-2993
Miguel Sandin
Sarah Romac
Fabrice Not
07/01/2022
Article
Origin, diversity, and biogeography of Antarctic scale worms (Polychaeta: Polynoidae): a wide‐scale barcoding approach
Ecology and Evolution , 2022 , 12 (7)
Dominique A Cowart
Stefano Schiaparelli
Maria Chiara Alvaro
Matteo Cecchetto
Anne‐sophie Le Port
Didier Jollivet
Stephane Hourdez
06/02/2022
Article
Persistent dominance of non-indigenous species in the inner part of a marina highlighted by multi-year photographic monitoring
Marine Ecology Progress Series , 2022 , 690 , pp. 15-30
Simon Rondeau
Dominique Davoult
Christophe D Lejeusne
Joseph Kenworthy
Olivier Bohner
Stéphane Loisel
Robin P.M. Gauff
05/01/2022
Article
A large-scale comparison of reproduction and recruitment of the stalked barnacle Pollicipes pollicipes across Europe
Marine Biology , 2022 , 169 (5) , pp. 63
Alba Aguión
Teresa Cruz
José Luis Acuña
Caroline Broudin
João Castro
Dominique Davoult
Jesus Dubert
Joana Fernandes
Katja Geiger
David Jacinto
et al.
05/01/2022
Article
Searching for genetic evidence of demographic decline in an arctic seabird: beware of overlapping generations
Heredity , 2022 , 128 (5) , pp. 364-376
Emeline Charbonnel
Claire Daguin-Thiébaut
Lucille Caradec
Eléonore Moittié
Olivier Gilg
Maria V. Gavrilo
Hallvard Strøm
Mark L. Mallory
Guy R. I. Morrison
Grant H. Gilchrist
et al.
04/01/2022
Article
Linking Micropollutants to Trait Syndromes across Freshwater Diatom, Macroinvertebrate, and Fish Assemblages
Water , 2022 , 14 (8) , pp. 1184
Albin Meyer
Benjamin Alric
Olivier Dézerald
Elise Billoir
Romain Coulaud
Floriane Larras
Cédric P Mondy
Philippe Usseglio-Polatera
04/01/2022
Article
Diversity and Evolution of Pigment Types in Marine Synechococcus Cyanobacteria
Genome Biology and Evolution , 2022 , 14 (4)
Théophile Grébert
Laurence Garczarek
Vincent Daubin
Florian Humily
Dominique Marie
Morgane Ratin
Alban Devailly
Gregory Farrant
Isabelle Mary
Daniella Mella-Flores
et al.
04/01/2022
Article
Freshwater protists: unveiling the unexplored in a large floodplain system
Environmental Microbiology , 2022 , 24 (4) , pp. 1731-1745
Sebastian Metz
Paula Huber
Victoria Accattatis
Adriana Lopes dos Santos
Estelle Bigeard
Fernando Unrein
Aurélie Chambouvet
Fabrice Not
Enrique Lara
Melina Devercelli
04/01/2022
Article
Parasitic infections by Group II Syndiniales target selected dinoflagellate host populations within diverse protist assemblages in a model coastal pond
Environmental Microbiology , 2022 , 24 (4) , pp. 1818-1834
Taylor Sehein
Rebecca Gast
Maria Pachiadaki
Laure Guillou
Virginia Edgcomb
03/17/2022
Article
Active hydrothermal vents in the Woodlark Basin may act as dispersing centres for hydrothermal fauna,Les systèmes hydrothermaux actifs du bassin de Woodlark peuvent jouer le rôle de centres de dispersion pour la faune hydrothermale
Communications Earth & Environment , 2022 , 3 , pp. 64
Cédric Boulart
Olivier Rouxel
Carla Scalabrin
Pierre Le Meur
Ewan Pelleter
Camille Poitrimol
Eric Thiébaut
Marjolaine Matabos
Jade Castel
Adrien Tran Lu y
et al.
02/28/2022
Chapître d'ouvrage
Marine cyanobacteria
, 2022 , 3 , pp. 103-157
Frédéric Partensky
Wolfgang Hess
Laurence Garczarek
02/16/2022
Article
Enhanced scanning electron microscopy images using muscovite mica, an example with Rhizaria
Microscopy Research and Technique , 2022
Natalia Llopis Monferrer
Valentin Foulon
Philippe Elies
02/07/2022
Article
Temperature Affects the Biological Control of Dinoflagellates by the Generalist Parasitoid Parvilucifera rostrata
Microorganisms , 2022 , 10 (2) , pp. 385
Matthew Schmitt
Aaron Telusma
Estelle Bigeard
Laure Guillou
Catharina Alves-De-Souza
02/04/2022
Article
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment
Science Advances , 2022 , 8 (5)
Tristan Cordier
Inès Barrenechea Angeles
Nicolas Henry
Franck Lejzerowicz
Cédric Berney
Raphaël Morard
Angelika Brandt
Marie-Anne Cambon-Bonavita
Lionel Guidi
Fabien Lombard
et al.
02/02/2022
Article
Spatio-temporal patterns in stable isotope composition of a benthic intertidal food web reveal limited influence from salt marsh vegetation and green tide
Marine Environmental Research , 2022 , 175 , pp. 105572
A Sturbois
P Riera
N Desroy
T Brébant
A Carpentier
A Ponsero
G Schaal
02/01/2022
Article
Molecular Features Associated with Resilience to Ocean Acidification in the Northern Quahog, Mercenaria mercenaria
Marine Biotechnology , 2022 , 806 , pp. 149925
Caroline Schwaner
Sarah Farhat
Michelle Barbosa
Isabelle Boutet
Arnaud Tanguy
Emmanuelle Pales Espinosa
Bassem Allam
01/05/2022
Article
Alien vs. predator: influence of environmental variability and predation on the survival of ascidian recruits of a native and alien species
Biological Invasions , 2022
Robin P M Gauff
Christophe D Lejeusne
Laure Arsenieff
Olivier Bohner
Jérôme Coudret
Florian Desbordes
Alise Jandard
Stéphane Loisel
Gaëtan Schires
Emmanuel Wafo
et al.
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