Hal Archives
05/07/2025
Article
Temporal dynamics and biogeography of sympagic and planktonic photosynthetic microbial eukaryotes during the under-ice Arctic bloom
ISME Communications , 2025
Clarence Wei Hung Sim
Catherine Gérikas Ribeiro
Florence Le Gall
Ian Probert
Priscilla Gourvil
Connie Lovejoy
Daniel Vaulot
Adriana Lopes dos Santos
05/01/2025
Article
Mg/Ca from mussel shells rather than δ18O as a promising temperature proxy for hydrothermal vent ecosystems
Deep Sea Research Part I: Oceanographic Research Papers , 2025 , 219 , pp. 104485
V. Mouchi
K. Nedoncelle
O. Bruguier
Z. Garmirian
N. Le Bris
F. Lartaud
04/29/2025
Article
Meiofauna investigation and taxonomic identification through imaging—a game of compromise
Limnology and Oceanography: Methods , 2025
Valentin Foulon
Abdesslam Benzinou
Kamal Nasreddine
Abdul Qayyum
Edwin Daché
Valentine Foulquier
Catherine Borremans
Marine Malloci
Colomban de Vargas
Daniela Zeppilli
03/31/2025
Article
Fine Scale Patterns of Population Structure and Connectivity in Scandinavian Flat Oysters in Scandinavia ( Ostrea edulis L.)
Evolutionary Applications , 2025 , 18 (4)
Chloé Robert
Homère Alves Monteiro
Alan Le Moan
Arnaud Tanguy
Ane Laugen
Jakob Hemmer-Hansen
Åsa Strand
Pierre de Wit
03/12/2025
Article
First release of the European marine omics biodiversity observation network (EMO BON) shotgun metagenomics data from water and sediment samples
Biodiversity Data Journal , 2025 , 13
Christina Pavloudi
Ioulia Santi
Iñigo Azua
Zuriñe Baña
Mauro Bastianini
Caroline Belser
Jone Bilbao
Julie Bitz-Thorsen
Caroline Broudin
Mathieu Camusat
et al.
03/01/2025
Article
Alpha and beta diversities of hydrothermal vent macrofaunal communities along the southwestern Pacific back-arc basins
Science of the Total Environment , 2025 , 967 , pp. 178694
Camille Poitrimol
Éric Thiébaut
Cédric Boulart
Cécile Cathalot
Olivier Rouxel
Didier Jollivet
Stephane Hourdez
Marjolaine Matabos
02/24/2025
Article
How institutions can better support international early-career researchers
Nature Human Behaviour , 2025
Marek Lubośny
Pavanee Annasawmy
Itziar Burgués Martínez
Timotej Turk Dermastia
Lucía Espasandín
Joana Filipa Fernandes
Marcos Fontela
Cristina Galobart
Odei Garcia-Garin
Inês Gregório
et al.
02/21/2025
Article
Unraveling the Impact of Marine Heatwaves on the Eukaryome of the Emblematic Mediterranean Red Coral Corallium rubrum
ISME Communications , 2025
Camille Prioux
Christine Ferrier-Pagès
Javier del Campo
Laure Guillou
Tristan Estaque
Denis Allemand
Romie Tignat-Perrier
02/01/2025
Article
Symbionts of predatory protists are widespread in the oceans and related to animal pathogens
Cell Host & Microbe , 2025 , 33 (2) , pp. 182-199.e7
Fabian Wittmers
Camille Poirier
Charles Bachy
Charlotte Eckmann
Olga Matantseva
Craig Carlson
Stephen Giovannoni
Ursula Goodenough
Alexandra Worden
01/31/2025
Article
A Long‐Term Ecological Research Data Set From the Marine Genetic Monitoring Program ARMS ‐ MBON 2018–2020
Molecular Ecology Resources , 2025
Nauras Daraghmeh
Katrina Exter
Justine Pagnier
Piotr Balazy
Ibon Cancio
Giorgos Chatzigeorgiou
Eva Chatzinikolaou
Maciej Chelchowski
Nathan Alexis Mitchell Chrismas
Thierry Comtet
et al.
01/23/2025
Preprint, Working Paper
A Novel Taxonomic Database for eukaryotic Mitochondrial Cytochrome Oxidase subunit I Gene (eKOI): Enhancing taxonomic resolution at community-level in metabarcoding analyses
Rubén González-Miguéns
Alex Gàlvez-Morante
Margarita Skamnelou
Meritxell Antó
Elena Casacuberta
Daniel Richter
Daniel Vaulot
Javier del Campo
Iñaki Ruiz-Trillo
01/23/2025
Preprint, Working Paper
The community of Marine Alveolate parasites in the Atlantic inflow to the Arctic Ocean is structured by season, depth and water mass
Elianne Egge
Daniel Vaulot
Aud Larsen
Bente Edvardsen
01/06/2025
Article
Selection Can Favor a Recombination Landscape That Limits Polygenic Adaptation
Molecular Biology and Evolution , 2025 , 42 (1)
Tom Parée
Luke Noble
Denis Roze
Henrique Teotónio
01/02/2025
Article
Metabolic interdependence and rewiring in radiolaria-microalgae photosymbioses
The International Society of Microbiologial Ecology Journal , 2025 , 19 (1)
Vera Nikitashina
Benjamin Bartels
Joost Samir Mansour
Charlotte Lekieffre
Johan Decelle
Christian Hertweck
Fabrice Not
Georg Pohnert
12/18/2024
Preprint, Working Paper
Long-term survey of intertidal rocky shore macrobenthic community metabolism and structure after primary succession
Aline Migné
François Bordeyne
D Davoult
12/13/2024
Ouvrage
Utilisation de l'imagerie hyperspectrale par vecteur drone
Charles Verpoorter
Laurent Brutier
Augustin Leprêtre
François Gevaert
Florian Douay
Aline Migné
Nicolas Spilmont
Gwendoline Duong
12/01/2024
Article
A step in the deep evolution of Alvinellidae (Annelida: Polychaeta): A phylogenomic comparative approach based on transcriptomes
Molecular Phylogenetics and Evolution , 2024 , 201 , pp. 108207
Pierre-Guillaume Brun
Stephane Hourdez
Marion Ballenghien
Yadong Zhou
Jean Mary
Didier Jollivet
11/28/2024
Article
Recovery after exploitation of stalked barnacles is facilitated by the presence of conspecifics: a study of post-harvest gap recolonization dynamics in SW Europe
Reviews in Fish Biology and Fisheries , 2024
Víctor Gómez-del Campo
Julio Arrontes
Teresa Cruz
Elsa Vázquez
Gonzalo Macho
Eric Thiébaut
Katja Geiger
Joana Fernandes
David Jacinto
Alba Aguión
et al.
11/27/2024
Preprint, Working Paper
Gelatinous matrix, an original strategy to cope with oligotrophy in Nassellaria (Radiolaria)
Natalia Llopis Monferrer
Sarah Romac
Manon Laget
Yasuhide Nakamura
Tristan Biard
Miguel Sandin
11/27/2024
Preprint, Working Paper
Phago-mixotrophy of small eukaryotic phytoplankton might alleviate iron limitation in HNLC Southern Ocean
Denise Rui Ying Ong
Andrés Gutiérrez-Rodríguez
Karl Safi
Dominique Marie
Karen Selph
Michael Stukel
Moira Décima
Adriana Lopes dos Santos
11/25/2024
Article
How marine are Marine Stramenopiles (MAST)? A cross-system evaluation
FEMS Microbiology Ecology , 2024 , 100 (11) , pp. fiae130
Aleix Obiol
Javier del Campo
Colomban de Vargas
Frédéric Mahé
Ramon Massana
11/14/2024
Preprint, Working Paper
Marine bacterial enrichment in the sea surface microlayer, and surface taxa aerosolization potential in the Western Mediterranean Sea
Julie Dinasquet
Birthe Zäncker
Alessia Nicosia
Estelle Bigeard
Anne-Claire Baudoux
Anja Engel
Cecile Guieu
Ingrid Obernosterer
Karine Sellegri
11/12/2024
Article
The physical and mechanical consequences of incorporating industrial residues into mortar and concrete mixtures for eco-friendly marine constructions
Innovative Infrastructure Solutions , 2024 , 9 (12) , pp. 466
Naily Nashira Figueroa
Antonio Brante
Jean-Charles Leclerc
Pablo Salgado
Claudio Oyarzo-Vera
10/31/2024
Article
Benthic foraminifera as bio-indicators of natural and anthropogenic conditions in Roscoff Aber Bay (Brittany, France)
PLoS ONE , 2024 , 19 (10) , pp. e0309463
Edwin Daché
Pierre-Antoine Dessandier
Ranju Radhakrishnan
Valentin Foulon
Loïc Michel
Colomban de Vargas
Jozée Sarrazin
Daniela Zeppilli
10/14/2024
Preprint, Working Paper
Chromosome-scale genome assembly and gene annotation of the hydrothermal vent annelid Alvinella pompejana yield insight into animal evolution in extreme environments
Sami El Hilali
Philippe Dru
Alan Le Moan
Yang Li
Martijn Huynen
André Hoelz
Robert Robinson
José Martín-Durán
Didier Jollivet
Adam Claridge-Chang
et al.
10/03/2024
Article
Light color regulation of photosynthetic antennae biogenesis in marine phytoplankton
Plant and Cell Physiology , 2024
David M. Kehoe
Avijit Biswas
Bo Chen
Louison Dufour
Théophile Grébert
Allissa M. Haney
Kes Lynn Joseph
Indika Kumarapperuma
Adam A. Nguyen
Morgane Ratin
et al.
10/01/2024
Article
Disentangling the effect of space, time, and environmental and anthropogenic drivers on coastal macrobenthic β diversity in contrasting habitats over 15 years
Science of the Total Environment , 2024 , 946 , pp. 173919
Chirine Toumi
Olivier Gauthier
Jacques Grall
Éric Thiébaut
Aurélien Boyé
10/01/2024
Article
O short-branch Microsporidia, where art thou? Identifying diversity hotspots for future sampling
European Journal of Protistology , 2024 , 96 , pp. 126119
Megan Gross
Ľubomír Rajter
Frédéric Mahé
David Bass
Cédric Berney
Nicolas Henry
Colomban de Vargas
Micah Dunthorn
09/28/2024
Article
Chromosome-level genome assembly of the bay scallop Argopecten irradians
Scientific Data , 2024 , 11 (1) , pp. 1057
Denis Grouzdev
Emmanuelle Pales Espinosa
Stephen Tettelbach
Sarah Farhat
Arnaud Tanguy
Isabelle Boutet
Nadège Guiglielmoni
Jean-François Flot
Harrison Tobi
Bassem Allam
09/27/2024
Article
“Pink power”—the importance of coralline algal beds in the oceanic carbon cycle
Nature Communications , 2024 , 15 (1) , pp. 8282
Nadine Schubert
Fernando Tuya
Viviana Peña
Paulo Horta
Vinícius Salazar
Pedro Neves
Cláudia Ribeiro
Francisco Otero-Ferrer
Fernando Espino
Kathryn Schoenrock
et al.
09/19/2024
Article
Positive species interactions structure rhodolith bed communities at a global scale
Biological Reviews , 2024 , 907 , pp. 167526
Fabio Bulleri
Nadine Schubert
Jason Hall-Spencer
Daniela Basso
Heidi Burdett
Ronaldo Francini-Filho
Jacques Grall
Paulo Horta
Nicholas Kamenos
Sophie Martin
et al.
09/18/2024
Article
Photophysiology of the haploid form of the cryptophyte Teleaulax amphioxeia
Journal of Phycology , 2024 , 60 (5) , pp. 1220-1236
Sarah Garric
Morgane Ratin
Benoit Gallet
Johan Decelle
Ian Probert
Francisco Rodriguez
Christophe Six
09/09/2024
Article
Development and validation of a 66K SNP array for the hard clam (Mercenaria mercenaria)
BMC Genomics , 2024 , 25 (1) , pp. 847
Denis Grouzdev
Sarah Farhat
Ximing Guo
Emmanuelle Pales Espinosa
Kimberly Reece
Jan Mcdowell
Huiping Yang
Gregg Rivara
Joshua Reitsma
Antoinette Clemetson
et al.
09/04/2024
Article
Global distribution, diversity, and ecological niche of Picozoa, a widespread and enigmatic marine protist lineage
Microbiome , 2024 , 12 (1) , pp. 162
Paula Huber
Daniele de Angelis
Hugo Sarmento
Sebastian Metz
Caterina Giner
Colomban De Vargas
Luigi Maiorano
Ramon Massana
Ramiro Logares
09/03/2024
Article
Post-fire Recovery Dynamics and Resilience of Ecosystem Services Capacity in Mediterranean-Type Ecosystems
Ecosystems , 2024 , 27 (6) , pp. 833-847
Philip Roche
C. Sylvie Campagne
Anne Ganteaume
09/01/2024
Article
A hydrothermal plume on the Southwest Indian Ridge revealed by a multi-proxy approach: Impact on iron and manganese distributions (GEOTRACES GS02)
Marine Chemistry , 2024 , pp. 104401
Corentin Baudet
Eva Bucciarelli
Géraldine Sarthou
Cédric Boulart
Ewan Pelleter
Millie Goddard-Dwyer
Hannah Whitby
Rui Zhang
Ingrid Obernosterer
David Gonzalez-Santana
et al.
07/31/2024
Article
Life cycle strategies in free‐living unicellular eukaryotes: Diversity, evolution, and current molecular tools to unravel the private life of microorganisms
Journal of Eukaryotic Microbiology , 2024
Iris Rizos
Miguel Frada
Lucie Bittner
Fabrice Not
07/08/2024
Article
Locally adaptive inversions in structured populations
Genetics , 2024 , 227 (3)
Carl Mackintosh
Michael Scott
Max Reuter
Andrew Pomiankowski
07/07/2024
Chapître d'ouvrage
Culturing Diatoms
Daniel Vaulot
Gust Bilcke
Peter Chaerle
Angela Falciatore
Priscillia Gourvil
Michael W. Lomas
Ian Probert
Wim Vyverman
07/01/2024
Article
Impaired photoacclimation in a kleptoplastidic dinoflagellate reveals physiological limits of early stages of endosymbiosis
Current Biology , 2024 , 34 (14) , pp. 3064-3076.e5
Sarah Garric
Morgane Ratin
Dominique Marie
Valentin Foulon
Ian Probert
Francisco Rodriguez
Christophe Six
06/12/2024
Article
Genome-resolved biogeography of Phaeocystales, cosmopolitan bloom-forming algae
Research Square - Preprint , 2024
Andrew Allen
Zoltán Füssy
Robert Lampe
Kevin Arrigo
Kerrie Barry
Margaret Mars Brisbin
Corina Brussaard
Johan Decelle
Colomban de Vargas
Liam Elbourne
et al.
06/06/2024
Article
Diverse patterns of correspondence between protist metabarcodes and protist metagenome-assembled genomes
PLoS ONE , 2024 , 19 (6) , pp. e0303697
Daryna Zavadska
Nicolas Henry
Adrià Auladell
Cédric Berney
Daniel Richter
06/03/2024
Article
Comparative population genomics unveils congruent secondary suture zone in Southwest Pacific Hydrothermal Vents
Frontiers in Ecology and Evolution , 2024 , 12 (42) , pp. 18969-18979
Adrien Tran Lu Y
Stéphanie Ruault
Claire Daguin-Thiébaut
Anne-Sophie Le Port
Marion Ballenghien
Jade Castel
Pierre-Alexandre Gagnaire
Nicolas Bierne
Sophie Arnaud-Haond
Camille Poitrimol
et al.
05/24/2024
Article
Navigating the science policy interface: a co-created mind-map to support early career research contributions to policy-relevant evidence
Environmental Evidence , 2024 , 13 (1) , pp. 15
Carla-Leanne Washbourne
Ranjini Murali
Nada Saidi
Sophie Peter
Paola Fontanella Pisa
Thuan Sarzynski
Hyeonju Ryu
Anna Filyushkina
Carole Sylvie Campagne
Andrew Kadykalo
et al.
05/23/2024
Article
Integrative taxonomy of new neomphaloidean gastropods from deep-sea hot vents of the southwestern Pacific
Zoological Journal of the Linnean Society , 2024
Chong Chen
Camille Poitrimol
Marjolaine Matabos
05/13/2024
Article
Arctic phytoplankton microdiversity across the marginal ice zone: Subspecies vulnerability to sea-ice loss
Elementa: Science of the Anthropocene , 2024 , 12 (1)
Catherine Gérikas Ribeiro
Adriana Lopes dos Santos
Nicole Trefault
Dominique Marie
Connie Lovejoy
Daniel Vaulot
04/08/2024
Article
Structure and Composition of Mantle Tissue from Red Abalone Haliotis rufescens, with Implications for Pearl Farming
Journal of Shellfish Research , 2024 , 43 (1)
Camila Sáez-Saavedra
Pedro Saucedo
Andrés Granados-Amores
Alejandro Rojas-Figueroa
Arnaud Tanguy
Rubén Araya
04/04/2024
Article
French coastal network for carbonate system monitoring: the CocoriCO2 dataset
Earth System Science Data , 2024 , 16 (4) , pp. 1667-1688
Sébastien Petton
Fabrice Pernet
Valérian Le Roy
Matthias Huber
Sophie Martin
Éric Macé
Yann Bozec
Stéphane Loisel
Peggy Rimmelin-Maury
Émilie Grossteffan
et al.
04/01/2024
Article
A single coelomic cell type is involved in both immune and respiratory functions of the coastal bioindicator annelid: Capitella C-Channel1 from the English Channel
Developmental and Comparative Immunology , 2024 , 153 , pp. 105132
Céline Boidin-Wichlacz
Ann Andersen
Nathalie Jouy
Aurélie Tasiemski
Stephane Hourdez
04/01/2024
Article
Diverse pathways to speciation revealed by marine snails
Trends in Genetics , 2024 , 40 (4) , pp. 337-351
Kerstin Johannesson
Rui Faria
Alan Le Moan
Marina Rafajlović
Anja Marie Westram
Roger Butlin
Sean Stankowski
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