12/05/2022
Article
A robust approach to estimate relative phytoplankton cell abundances from metagenomes
Molecular Ecology Resources , 2022 , 23 (1) , pp. 16-40
Juan José Pierella Karlusich
Eric Pelletier
Lucie Zinger
Fabien Lombard
Adriana Zingone
Sébastien Colin
Josep M Gasol
Richard Dorrell
Nicolas Henry
Eleonora Scalco
et al.
12/01/2022
Article
Marine gregarine genomes reveal the breadth of apicomplexan diversity with a partially conserved glideosome machinery
BMC Genomics , 2022 , 23 (1) , pp. 485
Julie Boisard
Evelyne Duvernois-Berthet
Linda Duval
Joseph Schrével
Laure Guillou
Amandine Labat
Sophie Le Panse
Gérard Prensier
Loïc Ponger
Isabelle Florent
12/01/2022
Article
Comparative biology and ecology of apicomplexans and dinoflagellates: a unique meeting of minds and biology
Trends in Parasitology , 2022 , 38 (12) , pp. 1012-1019
Ross F Waller
Catharina Alves-De-Souza
Phillip Cleves
Jan Janouškovec
Ehsan Kayal
Thomas Krueger
Jeremy Szymczak
Norico Yamada
Laure Guillou
12/01/2022
Article
Comparative analysis of the Mercenaria mercenaria genome provides insights into the diversity of transposable elements and immune molecules in bivalve mollusks
BMC Genomics , 2022 , 23 (1) , pp. 192
Sarah Farhat
Eric Bonnivard
Emmanuelle Pales Espinosa
Arnaud Tanguy
Isabelle Boutet
Nadège Guiglielmoni
Jean-François Flot
Bassem Allam
11/16/2022
Preprint, Working Paper
Global observation of plankton communities from space
Hiroto Kaneko
Hisashi Endo
Nicolas Henry
Cédric Berney
Frédéric Mahé
Julie Poulain
Karine Labadie
Odette Beluche
Roy El Hourany
Samuel Chaffron
et al.
11/01/2022
Article
Chromosomal assembly of the flat oyster ( Ostrea edulis L.) genome as a new genetic resource for aquaculture
Evolutionary Applications , 2022 , 15 (11) , pp. 1730-1748
Isabelle Boutet
Homère Alves Monteiro
Lyam Baudry
Takeshi Takeuchi
Eric Bonnivard
Bernard Billoud
Sarah Farhat
Ricardo Gonzales-Araya
Benoit Salaun
Ann Andersen
et al.
11/01/2022
Article
Responses of early life stages of European abalone (Haliotis tuberculata) to ocean acidification after parental conditioning: Insights from a transgenerational experiment
Marine Environmental Research , 2022 , 181 , pp. 105753
Stéphanie Auzoux-Bordenave
Apolline Ledoux
Sophie Martin
Carole Di Poi
Marc Suquet
Aïcha Badou
Fanny Gaillard
Arianna Servili
Nelly Le Goïc
Sylvain Huchette
et al.
11/01/2022
Article
Chromosome‐level reference genome for European flat oyster ( Ostrea edulis L.)
Evolutionary Applications , 2022 , 15 (11) , pp. 1713-1729
Manu Kumar Gundappa
Carolina Peñaloza
Tim Regan
Isabelle Boutet
Arnaud Tanguy
Ross Houston
Tim Bean
Daniel Macqueen
11/01/2022
Article
Two parallel chromosome‐level reference genomes to support restoration and aquaculture of European flat oyster Ostrea edulis
Evolutionary Applications , 2022 , 15 (11) , pp. 1709-1712
Tim Bean
Arnaud Tanguy
Carolina Peñaloza
Manu Kumar Gundappa
Isabelle Boutet
Ross Houston
Daniel Macqueen
Pierre Boudry
10/28/2022
Preprint, Working Paper
Global phylogeography of marine Synechococcus in coastal areas reveals strikingly different communities than in the open ocean
Hugo Doré
Jade Leconte
Ulysse Guyet
Solène Breton
Gregory Farrant
David Demory
Morgane Ratin
Mark Hoebeke
Erwan Corre
Frances Pitt
et al.
10/14/2022
Article
Stomach content and stable isotope analyses provide complementary insights into the trophic ecology of coastal temperate bentho-demersal assemblages under environmental and anthropogenic pressures
Marine Environmental Research , 2022 , 182 , pp. 105770
Sturbois Anthony
A Cozic
Gauthier Schaal
Nicolas Desroy
Pascal Riera
Olivier Le Pape
P Le Mao
A Ponsero
Alexandre Carpentier
10/10/2022
Article
Siliceous Rhizaria abundances and diversity in the Mediterranean Sea assessed by combined imaging and metabarcoding approaches
Frontiers in Marine Science , 2022 , 9
Natalia Llopis Monferrer
Tristan Biard
Miguel Sandin
Fabien Lombard
Marc Picheral
Amanda Elineau
Lionel Guidi
Aude Leynaert
Paul Tréguer
Fabrice Not
10/05/2022
Article
Contrasted phylogeographic patterns of hydrothermal vent gastropods along South West Pacific: Woodlark Basin, a possible contact zone and/or stepping-stone
PLoS ONE , 2022 , 17 (10) , pp. e0275638
Camille Poitrimol
Éric Thiébaut
Claire Daguin-Thiébaut
Anne-Sophie Le Port
Marion Ballenghien
Adrien Tran Lu Y
Didier Jollivet
Stephane Hourdez
Marjolaine Matabos
09/26/2022
Article
Diazotrophs are overlooked contributors to carbon and nitrogen export to the deep ocean
The International Society of Microbiologial Ecology Journal , 2022
Sophie Bonnet
Mar Benavides
Frédéric a C Le Moigne
Mercedes Camps
Antoine Torremocha
Olivier Grosso
Céline Dimier
Dina Spungin
Ilana Berman-Frank
Laurence Garczarek
et al.
09/14/2022
Article
An update on dissolved methane distribution in the subtropical North Atlantic Ocean
Ocean Science , 2022 , 18 (5) , pp. 1377-1388
Anna Kolomijeca
Lukas Marx
Sarah Reynolds
Thierry Cariou
Edward Mawji
Cédric Boulart
09/13/2022
Article
Impact of in Situ Simulated Climate Change on Communities and Non-Indigenous Species: Two Climates, Two Responses
Journal of Chemical Ecology , 2022 , 48 (9-10) , pp. 761-771
Robin Gauff
Christophe D Lejeusne
Stephane Greff
Stephane Loisel
Olivier Bohner
Dominique Davoult
08/17/2022
Article
Plankton Planet: A frugal, cooperative measure of aquatic life at the planetary scale
Frontiers in Marine Science , 2022 , 9 , pp. 936972
Colomban de Vargas
Noan Le Bescot
Thibaut Pollina
Nicolas Henry
Sarah Romac
Sébastien Colin
Nils Haëntjens
Margaux Carmichael
Calixte Berger
David Le Guen
et al.
08/11/2022
Article
Biophysical modelling of larval dispersal and population connectivity of a stalked barnacle: implications for fishery governance
Marine Ecology Progress Series , 2022 , 694 , pp. 105-123
R Nolasco
J Dubert
Jl Acuña
A Aguión
T Cruz
Jn Fernandes
Kj Geiger
D Jacinto
G Macho
D Mateus
et al.
08/09/2022
Article
Diversity and biogeography of planktonic diatoms in Svalbard fjords: The role of dispersal and Arctic endemism in phytoplankton community structuring
Elementa: Science of the Anthropocene , 2022 , 10 (1)
Luka Šupraha
Kerstin Klemm
Sandra Gran-Stadniczeñko
Cora Hörstmann
Daniel Vaulot
Bente Edvardsen
Uwe John
08/01/2022
Article
Modeling water regulation ecosystem services: A review in the context of ecosystem accounting
Ecosystem Services , 2022 , 56 , pp. 101458
Stoyan Nedkov
Sylvie Campagne
Bilyana Borisova
Petr Krpec
Hristina Prodanova
Ioannis Kokkoris
Desislava Hristova
Solen Le Clec'H
Fernando Santos-Martin
Benjamin Burkhard
et al.
08/01/2022
Article
Planktonic protist diversity across contrasting Subtropical and Subantarctic waters of the southwest Pacific
Progress in Oceanography , 2022 , 206 (7) , pp. 102809
Miguel Sandin
Sarah Romac
Fabrice Not
07/22/2022
Article
PlanktoScope: Affordable Modular Quantitative Imaging Platform for Citizen Oceanography
Frontiers in Marine Science , 2022 , 9
Thibaut Pollina
Adam Larson
Fabien Lombard
Hongquan Li
David Le Guen
Sébastien Colin
Colomban de Vargas
Manu Prakash
07/08/2022
Article
Intracellular development and impact of a marine eukaryotic parasite on its zombified microalgal host
The International Society of Microbiologial Ecology Journal , 2022 , 16 (10) , pp. 2348-2359
Johan Decelle
Ehsan Kayal
Estelle Bigeard
Benoit Gallet
Jeremy Bougoure
Peta Clode
Nicole Schieber
Rachel Templin
Elisabeth Hehenberger
Gerard Prensier
et al.
07/01/2022
Article
Origin, diversity, and biogeography of Antarctic scale worms (Polychaeta: Polynoidae): a wide‐scale barcoding approach
Ecology and Evolution , 2022 , 12 (7)
Dominique A Cowart
Stefano Schiaparelli
Maria Chiara Alvaro
Matteo Cecchetto
Anne‐sophie Le Port
Didier Jollivet
Stephane Hourdez
07/01/2022
Article
Intra‐genomic rRNA gene variability of Nassellaria and Spumellaria (Rhizaria, Radiolaria) assessed by Sanger, MinION and Illumina sequencing
Environmental Microbiology , 2022 , 24 (7) , pp. 2979-2993
Miguel Sandin
Sarah Romac
Fabrice Not
07/01/2022
Article
Phytoplanktonic response to simulated volcanic and desert dust deposition events in the South Indian and Southern Oceans
Limnology and Oceanography , 2022 , 67 (7) , pp. 1537-1553
Carla Geisen
Céline Ridame
Emilie Journet
Pierre Delmelle
Dominique Marie
Claire Lo Monaco
Nicolas Metzl
Rawaa Ammar
Joelle Kombo
Damien Cardinal
06/02/2022
Article
Persistent dominance of non-indigenous species in the inner part of a marina highlighted by multi-year photographic monitoring
Marine Ecology Progress Series , 2022 , 690 , pp. 15-30
Simon Rondeau
Dominique Davoult
Christophe D Lejeusne
Joseph Kenworthy
Olivier Bohner
Stéphane Loisel
Robin P.M. Gauff
05/20/2022
Article
Seasonal dynamics of marine protist communities in tidally mixed coastal waters
Molecular Ecology , 2022 , 31 (14) , pp. 3761-3783
Mariarita Caracciolo
Fabienne Rigaut-Jalabert
Sarah Romac
Frédéric Mahé
Samuel Forsans
Jean‐philippe Gac
Laure Arsenieff
Maxime Manno
Samuel Chaffron
Thierry Cariou
et al.
05/01/2022
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Searching for genetic evidence of demographic decline in an arctic seabird: beware of overlapping generations
Heredity , 2022 , 128 (5) , pp. 364-376
Emeline Charbonnel
Claire Daguin-Thiébaut
Lucille Caradec
Eléonore Moittié
Olivier Gilg
Maria V. Gavrilo
Hallvard Strøm
Mark L. Mallory
R. I. Guy Morrison
H. Grant Gilchrist
et al.
05/01/2022
Article
A large-scale comparison of reproduction and recruitment of the stalked barnacle Pollicipes pollicipes across Europe
Marine Biology , 2022 , 169 (5) , pp. 63
Alba Aguión
Teresa Cruz
José Luis Acuña
Caroline Broudin
João Castro
Dominique Davoult
Jesus Dubert
Joana Fernandes
Katja Geiger
David Jacinto
et al.
04/19/2022
Article
Dispersal and habitat dynamics shape the genetic structure of the Northern chamois in the Alps
Journal of Biogeography , 2022
Flurin Leugger
Thomas Broquet
Dirk Nikolaus Karger
Delphine Rioux
Elena Buzan
Luca Corlatti
Barbara Crestanello
Nadine Curt-Grand-Gaudin
Heidi Christine Hauffe
Barbora Rolečková
et al.
04/01/2022
Article
Parasitic infections by Group II Syndiniales target selected dinoflagellate host populations within diverse protist assemblages in a model coastal pond
Environmental Microbiology , 2022 , 24 (4) , pp. 1818-1834
Taylor Sehein
Rebecca Gast
Maria Pachiadaki
Laure Guillou
Virginia Edgcomb
04/01/2022
Article
Freshwater protists: unveiling the unexplored in a large floodplain system
Environmental Microbiology , 2022 , 24 (4) , pp. 1731-1745
Sebastian Metz
Paula Huber
Victoria Accattatis
Adriana Lopes dos Santos
Estelle Bigeard
Fernando Unrein
Aurélie Chambouvet
Fabrice Not
Enrique Lara
Melina Devercelli
04/01/2022
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Linking Micropollutants to Trait Syndromes across Freshwater Diatom, Macroinvertebrate, and Fish Assemblages
Water , 2022 , 14 (8) , pp. 1184
Albin Meyer
Benjamin Alric
Olivier Dézerald
Elise Billoir
Romain Coulaud
Floriane Larras
Cédric P Mondy
Philippe Usseglio-Polatera
04/01/2022
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Diversity and Evolution of Pigment Types in Marine Synechococcus Cyanobacteria
Genome Biology and Evolution , 2022 , 14 (4)
Théophile Grébert
Laurence Garczarek
Vincent Daubin
Florian Humily
Dominique Marie
Morgane Ratin
Alban Devailly
Gregory Farrant
Isabelle Mary
Daniella Mella-Flores
et al.
03/17/2022
Article
Active hydrothermal vents in the Woodlark Basin may act as dispersing centres for hydrothermal fauna,Les systèmes hydrothermaux actifs du bassin de Woodlark peuvent jouer le rôle de centres de dispersion pour la faune hydrothermale
Communications Earth & Environment , 2022 , 3 , pp. 64
Cédric Boulart
Olivier Rouxel
Carla Scalabrin
Pierre Le Meur
Ewan Pelleter
Camille Poitrimol
Eric Thiébaut
Marjolaine Matabos
Jade Castel
Adrien Tran Lu y
et al.
02/28/2022
Chapître d'ouvrage
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, 2022 , 3 , pp. 103-157
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Laurence Garczarek
02/16/2022
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Enhanced scanning electron microscopy images using muscovite mica, an example with Rhizaria
Microscopy Research and Technique , 2022
Natalia Llopis Monferrer
Valentin Foulon
Philippe Elies
02/07/2022
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Temperature Affects the Biological Control of Dinoflagellates by the Generalist Parasitoid Parvilucifera rostrata
Microorganisms , 2022 , 10 (2) , pp. 385
Matthew Schmitt
Aaron Telusma
Estelle Bigeard
Laure Guillou
Catharina Alves-De-Souza
02/04/2022
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Patterns of eukaryotic diversity from the surface to the deep-ocean sediment
Science Advances , 2022 , 8 (5)
Tristan Cordier
Inès Barrenechea Angeles
Nicolas Henry
Franck Lejzerowicz
Cédric Berney
Raphaël Morard
Angelika Brandt
Marie-Anne Cambon-Bonavita
Lionel Guidi
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et al.
02/02/2022
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Spatio-temporal patterns in stable isotope composition of a benthic intertidal food web reveal limited influence from salt marsh vegetation and green tide
Marine Environmental Research , 2022 , 175 , pp. 105572
A Sturbois
P Riera
N Desroy
T Brébant
A Carpentier
A Ponsero
G Schaal
02/01/2022
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Molecular Features Associated with Resilience to Ocean Acidification in the Northern Quahog, Mercenaria mercenaria
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Michelle Barbosa
Isabelle Boutet
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Emmanuelle Pales Espinosa
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01/05/2022
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Alien vs. predator: influence of environmental variability and predation on the survival of ascidian recruits of a native and alien species
Biological Invasions , 2022
Robin P M Gauff
Christophe D Lejeusne
Laure Arsenieff
Olivier Bohner
Jérôme Coudret
Florian Desbordes
Alise Jandard
Stéphane Loisel
Gaëtan Schires
Emmanuel Wafo
et al.
01/01/2022
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Swarm v3: towards tera-scale amplicon clustering
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Frédéric Mahé
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01/01/2022
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Water eDNA metabarcoding is effective in detecting non-native species in marinas, but detection errors still hinder its use for passive monitoring
Biofouling , 2022
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Carbon and nitrogen uptake through photosynthesis and feeding by photosymbiotic Acantharia
Open Research Europe , 2022 , 2 , pp. 120
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Per Juel Hansen
Cédrix Leroux
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01/01/2022
Article
Inter-Specific Genetic Exchange Despite Strong Divergence in Deep-Sea Hydrothermal Vent Gastropods of the Genus Alviniconcha
Genes , 2022 , 13 (6) , pp. 985
Jade Castel
Stéphane Hourdez
Florence Pradillon
Claire Daguin-Thiébaut
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metaPR 2 : A database of eukaryotic 18S rRNA metabarcodes with an emphasis on protists
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Comparative Thermophysiology of Marine Synechococcus CRD1 Strains Isolated From Different Thermal Niches in Iron-Depleted Areas
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Louison Dufour
Hugo Doré
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Léo Chasselin
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