Hal Archives
10/17/2025
Article
The southern gap in ocean microbiome science
Ocean Microbiology , 2025 , 1 (1) , pp. 6
Hugo Sarmento
Paula Huber
Célio Dias Santos-Júnior
André Abreu
Thulani Makhalanyane
Natasha Karenyi
Emma Rocke
Silvia Acinas
Linda Amaral-Zettler
Moacyr Araujo
et al.
10/09/2025
Article
Highlighting the value of selecting terrestrial snails for radiocarbon dating based on French Holocene archaeological sites
Radiocarbon , 2025 , pp. 1-30
Sophie Martin
Isabel Figueiral
Benoît Devillers
Christophe Jorda
Pascale Chevillot
Frédéric Magnin
10/07/2025
Article
Structural and evolutionary features of red algal UV sex chromosomes
Genome Biology , 2025 , 26 (1) , pp. 341
Agnieszka Lipinska
Guillaume Cossard
Paul Epperlein
Tobias Woertwein
Cecile Molinier
Olivier Godfroy
Sabrina Carli
Ligia Ayres-Ostrock
Emma Lavaut
Fabiana Marchi
et al.
10/01/2025
Chapître d'ouvrage
Snapshots of Coral Reef Biodiversity
, 2025 , 21 , pp. 187-241
Félix Pellerin
Diane Espel
Jane Ballard
Jessica Salaün
Ehsan Kayal
Mayalen Zubia
Grégory Lasne
Michel Pichon
Pauline Bosserelle
Julien Wickel
et al.
09/08/2025
Article
Establishing the ELIXIR Microbiome Community
F1000Research , 2025 , 13 , pp. 50
Robert D Finn
Bachir Balech
Josephine Burgin
Physilia Chua
Erwan Corre
Cymon J Cox
Claudio Donati
Vitor Martins dos Santos
Bruno Fosso
John Hancock
et al.
09/01/2025
Article
Towards a trait-based framework for protist ecology and evolution
Trends in Microbiology , 2025
Mahwash Jamy
Pierre Ramond
David Bass
Javier del Campo
Micah Dunthorn
Enrique Lara
Aditee Mitra
Daniel Vaulot
Luciana Santoferrara
09/01/2025
Comm. dans un congrès
Immune response of Mytilus edulis challenged with low-virulence and high-virulence isolates of F. halioticida
Hélène Bouras
Erwan Corre
Benoit Bernay
Jean Louis Blin
Manuel Savary
Maryline Houssin
Céline Zatylny-Gaudin
08/25/2025
Article
A call for early-career teams in interdisciplinary microbiology research
Nature Microbiology , 2025 , 10 (9) , pp. 2097-2099
Arianna Krinos
Daniel Muratore
Meriel Bittner
Preston Akenga
Leslie Wallace Auerbach
Michael Dills
Emile Faure
Edgart Flores
Naomi Levine
Thiago Monteiro
et al.
08/25/2025
Article
Origin and evolutionary trajectories of brown algal sex chromosomes
Nature Ecology & Evolution , 2025
Josué Barrera-Redondo
Agnieszka Lipinska
Pengfei Liu
Erica Dinatale
Guillaume Cossard
Kenny Bogaert
Masakazu Hoshino
Rory Craig
Komlan Avia
Goncalo Leiria
et al.
08/11/2025
Article
Genealogical Analysis of Replicate Flower Colour Hybrid Zones in Antirrhinum
Molecular Ecology , 2025
Arka Pal
Daria Shipilina
Alan Le Moan
Adrian Mcnairn
Jennifer Grenier
Marek Kucka
Graham Coop
Yingguang Frank Chan
Nicholas Barton
David Field
et al.
08/11/2025
Article
De novo transcriptome of the red alga Gracilariopsis tenuifrons (Gracilariales, Rhodophyta) in response to prolonged temperature stress
Journal of Phycology , 2025
André Faria
Olivier Godfroy
J. Mark Cock
Estela Plastino
08/08/2025
Article
Hydrothermal activity indirectly influences ice nuclei particles in seawater and nascent sea spray of the Subtropical Pacific Ocean
EGUsphere , 2025
Yannick Bras
Evelyn Freney
Mar Benavides
Estelle Bigeard
Gabriel Dulaquais
Céline Dimier
Laetitia Bouvier
Mickaël Ribeiro
Cécile Guieu
Sophie Bonnet
et al.
08/05/2025
Article
Smaller plants in warmer water could have implications for future Kelp forests
Scientific Reports , 2025 , 15 (1) , pp. 28616
Thomas Wernberg
Karen Filbee‐Dexter
Thibaut de Bettignies
Jean‐charles Leclerc
Dominique Davoult
Laurent Lévêque
Hartvig Christie
David C. Dyer
Robert J. Anderson
Mark D. Rothman
et al.
08/01/2025
Article
Asymmetrical cell division in brown algae: How far can we take the paradigm?
Current Opinion in Plant Biology , 2025 , 86 , pp. 102758
Bénédicte Charrier
08/01/2025
Article
Seasonal Transition in the Dominance of Photoautotrophic and Heterotrophic Protists in the Photic Layer of a Subtropical Marine Ecosystem
Environmental Microbiology Reports , 2025 , 17 (4) , pp. e70126 (15p.)
Yoav Avrahami
Raffaele Siano
Maxim Rubin‐blum
Gil Koplovitz
Nicolas Henry
Colomban de Vargas
Miguel J. Frada
07/24/2025
Article
Competition for light color between marine <i>Synechococcus</i> strains with fixed and variable pigmentation
Applied and Environmental Microbiology , 2025 , 91 (8) , pp. e00087-25
Louison Dufour
Laurence Garczarek
Francesco Mattei
Bastian Gouriou
Julia Clairet
Morgane Ratin
David M Kehoe
Jef Huisman
Jolanda M H Verspagen
Frédéric Partensky
07/23/2025
Article
Omics to Study and Manage Aquatic Environments: A Snapshot From the A qua E c O mics Meeting (Evian‐les‐Bains, 2025)
Molecular Ecology , 2025 , 34 (17)
Frédéric Rimet
Clarisse Lemonnier
Benjamin Alric
Pedro Beja
Lucie Bittner
Jonas Bylemans
Florian Leese
Ramiro Logares
Kristian Meissner
Fabrice Not
et al.
07/09/2025
Article
Taxonomic Revision of the Genus Prasiola Meneghini, 1838 (Prasiolaceae, Trebouxiophyceae) Results in the Establishment of Three New Genera
Cryptogamie Algologie , 2025 , 46 (2)
Svenja Heesch
Michael Guiry
Fabio Rindi
Line Le Gall
07/08/2025
Poster
Biodiversity Genomic Data Management an IFB Initiative
Clara Emery
Lucas Leclère
Eric Pelletier
Vincent Lefort
Yvan Le Bras
Erwan Corre
07/08/2025
Comm. dans un congrès
Metagenome-scale metabolic modelling for the characterization of cross-feeding interactions in freshwater cyanobacteria-associated microbial communities
Juliette Audemard
Nicolas Creusot
Julie Leloup
Charlotte Duval
Sébastien Halary
Jeanne Got
B Marie
Gabriel V. Markov
Binta Diémé
Clémence Frioux
07/08/2025
Poster
BYTE-Sea: the digital infrastructure of ATLASea, the French marine genome sequencing programme
Annie Lebreton
Loraine Brillet-Guéguen
Karine Massau
Alexandre Nicaise
Arthur Le Bars
Lucile Jeusset
Samuel Lalam
Alexandra Louis
Hugues Roest Crollius
Matéo Boudet
et al.
07/06/2025
Poster
Filling the gaps between scales to understand biomass properties
P. Assemat
Cecile Barron
Mirjam Czjzek
Paul Duru
Fabienne Guillon
Severine Humbert
Frédéric Jamme
David Legland
Grégoire Malandain
Valérie Méchin
et al.
07/01/2025
Comm. dans un congrès
Local scale environmental gradients within harbours induce strong community and physiological shifts on hard artificial substrates
Christophe Lejeusne
Robin P M Gauff
Olivier Bohner
Simon Rondeau
Stéphane Loisel
Stephane Greff
Jérôme Coudret
Dominique Davoult
07/01/2025
Article
Meiofauna investigation and taxonomic identification through imaging—a game of compromise
Limnology and Oceanography: Methods , 2025 , 23 (7) , pp. 482-499
Valentin Foulon
Abdesslam Benzinou
Kamal Nasreddine
Abdul Qayyum
Edwin Daché
Valentine Foulquier
Catherine Borremans
Marine Malloci
Colomban de Vargas
Daniela Zeppilli
06/05/2025
Article
Pharmacophore-guided optimization of the hit compound CTN1122 in the design of promising imidazo[1,2- a ]pyrazine derivatives targeting the casein kinase 1 for antileishmanial therapy
RSC Medicinal Chemistry , 2025
Lhana Tisseur
Cédric Logé
Sandrine Cojean
Khadidiatou Gassama
Lilian Karcher
Fabrice Pagniez
Christian Cavé
Guillaume Bernadat
Philippe Loiseau
Stéphane Bach
et al.
06/04/2025
Article
A Practical Comparison of Short‐ and Long‐Read Metabarcoding Sequencing: Challenges and Solutions for Plastid Read Removal and Microbial Community Exploration of Seaweed Samples
Molecular Ecology Resources , 2025 , 25 (7)
Coralie Rousseau
Nicolas Henry
Sylvie Rousvoal
Gwenn Tanguy
Erwan Legeay
Catherine Leblanc
Simon Dittami
06/03/2025
Article
New Insights into the Anticancer Effects and Toxicogenomic Safety of Two β-Lapachone Derivatives
Pharmaceuticals , 2025 , 18 (6)
José Rivaldo de Lima
Alexandre José da Silva Góes
Elizabeth Fernanda de Oliveira Borba
Meykson Alexandre da Silva
Rodrigo Ribeiro Alves Caiana
Maria Do Desterro Rodrigues
Mariza Severina de Lima Silva
Cristiano Aparecido Chagas
Blandine Baratte
Thomas Robert
et al.
06/03/2025
Comm. dans un congrès
Snapshots of coral reef biodiversity and challenges in a time of crisis
Félix Pellerin
Diane Espel
Jane Ballard
Jessica Salaün
Ehsan Kayal
Mayalen Zubia
Grégory Lasne
Michel Pichon
Pauline Bosserelle
Julien Wickel
et al.
06/02/2025
Poster
Exploration of seaweed and wheat grain by magnetic resonance imaging: Preliminary results
Catherine Deborde
Diane Jouanneau
Laïla Rodrigues de Araujo Alves Cruz
Amélie Bresson
Christine Girousse
Jacques Le Gouis
Anne-Laure Chateigner-Boutin
06/01/2025
Article
Integrative taxonomy of two new peltospirid gastropods from Mid-Atlantic Ridge hot vents, including a potentially symbiotic species
Zoological Journal of the Linnean Society , 2025 , 204 (2) , pp. zlaf055 (22p.)
Chong Chen
Florence Pradillon
Coral Diaz-Recio Lorenzo
Joan Manel Alfaro-Lucas
06/01/2025
Article
Extant diversity, biogeography, and evolutionary history of Radiolaria
Current Biology , 2025 , 35 (11) , pp. 2524-2538.e6
Miguel Sandin
Johan Renaudie
Noritoshi Suzuki
Fabrice Not
06/01/2025
Article
Structure, function and catalytic mechanism of the carrageenan-sulfatases from the marine bacterium Zobellia galactanivorans Dsij
Carbohydrate Polymers , 2025 , 358 , pp. 123487
Antonin Chevenier
Mathieu Fanuel
Ekaterina Sokolova
Diego Mico Latorre
Diane Jouanneau
Alexandra Jeudy
Aurélie Préchoux
Marie-Katherin Zühlke
Jürgen Bartel
Dörte Becher
et al.
05/15/2025
Preprint, Working Paper
Life-cycle-related gene expression patterns in the brown algae
Pélagie Ratchinski
Olivier Godfroy
Benjamin Noel
Jean-Marc Aury
J. Mark Cock
05/07/2025
Article
Temporal dynamics and biogeography of sympagic and planktonic photosynthetic microbial eukaryotes during the under-ice Arctic bloom
ISME Communications , 2025
Clarence Wei Hung Sim
Catherine Gérikas Ribeiro
Florence Le Gall
Ian Probert
Priscilla Gourvil
Connie Lovejoy
Daniel Vaulot
Adriana Lopes dos Santos
05/05/2025
Article
Mating system and the evolution of recombination rates in seed plants
Journal of Evolutionary Biology , 2025 , 5 (1) , pp. e13
Thomas Brazier
Roman Stetsenko
Denis Roze
Sylvain Glémin
05/01/2025
Article
Mg/Ca from mussel shells rather than δ18O as a promising temperature proxy for hydrothermal vent ecosystems
Deep Sea Research Part I: Oceanographic Research Papers , 2025 , 219 , pp. 104485
V. Mouchi
K. Nedoncelle
O. Bruguier
Z. Garmirian
N. Le Bris
F. Lartaud
05/01/2025
Article
Is the Gelatinous Matrix of Nassellaria (Radiolaria) a Strategy for Coping With Oligotrophy?
Environmental Microbiology , 2025 , 27 (5) , pp. 16p. / e70098
Natalia Llopis Monferrer
Sarah Romac
Manon Laget
Yasuhide Nakamura
Tristan Biard
Miguel Sandin
04/28/2025
Article
Transcriptomic analyses reveal sexual cues in reproductive life stages of uncultivated Acantharia (Radiolaria)
Protist , 2025 , 177 , pp. 126102
Iris Rizos
Sarah Romac
Caroline Juery
Charlotte Berthelier
Johan Decelle
Juliana Bernardes
Erwan Corre
Lucie Bittner
Fabrice Not
04/11/2025
Article
Patterns and drivers of diatom diversity and abundance in the global ocean
Nature Communications , 2025 , 16 (1) , pp. 3452
Juan Pierella Karlusich
Karen Cosnier
Lucie Zinger
Nicolas Henry
Charlotte Nef
Guillaume Bernard
Eleonora Scalco
Etienne Dvorak
Silvia Acinas
Marcel Babin
et al.
04/03/2025
Article
Author Correction: “Pink power”—the importance of coralline algal beds in the oceanic carbon cycle
Nature Communications , 2025 , 16 (1) , pp. 3180
Nadine Schubert
Fernando Tuya
Viviana Peña
Paulo Horta
Vinícius Salazar
Pedro Neves
Cláudia Ribeiro
Francisco Otero-Ferrer
Fernando Espino
Kathryn Schoenrock
et al.
03/31/2025
Article
Fine Scale Patterns of Population Structure and Connectivity in Scandinavian Flat Oysters in Scandinavia ( Ostrea edulis L.)
Evolutionary Applications , 2025 , 18 (4)
Chloé Robert
Homère Alves Monteiro
Alan Le Moan
Arnaud Tanguy
Ane Laugen
Jakob Hemmer-Hansen
Åsa Strand
Pierre de Wit
03/12/2025
Article
First release of the European marine omics biodiversity observation network (EMO BON) shotgun metagenomics data from water and sediment samples
Biodiversity Data Journal , 2025 , 13
Christina Pavloudi
Ioulia Santi
Iñigo Azua
Zuriñe Baña
Mauro Bastianini
Caroline Belser
Jone Bilbao
Julie Bitz-Thorsen
Caroline Broudin
Mathieu Camusat
et al.
03/08/2025
Article
Multiple, diverse endogenous giant virus elements within the genome of a brown alga
Virus Evolution , 2025 , 11 (1)
Dean Mckeown
Alexandre Cormier
Declan Schroeder
Arnaud Couloux
Nachida Tadrent
J. Mark Cock
Erwan Corre
03/01/2025
Article
Alpha and beta diversities of hydrothermal vent macrofaunal communities along the southwestern Pacific back-arc basins
Science of the Total Environment , 2025 , 967 , pp. 178694
Camille Poitrimol
Éric Thiébaut
Cédric Boulart
Cécile Cathalot
Olivier Rouxel
Didier Jollivet
Stephane Hourdez
Marjolaine Matabos
02/24/2025
Article
How institutions can better support international early-career researchers
Nature Human Behaviour , 2025
Marek Lubośny
Pavanee Annasawmy
Itziar Burgués Martínez
Timotej Turk Dermastia
Lucía Espasandín
Joana Filipa Fernandes
Marcos Fontela
Cristina Galobart
Odei Garcia-Garin
Inês Gregório
et al.
02/21/2025
Article
Unraveling the Impact of Marine Heatwaves on the Eukaryome of the Emblematic Mediterranean Red Coral Corallium rubrum
ISME Communications , 2025
Camille Prioux
Christine Ferrier-Pagès
Javier del Campo
Laure Guillou
Tristan Estaque
Denis Allemand
Romie Tignat-Perrier
02/04/2025
Comm. dans un congrès
Phytostabilisation d'un site minier : étude de faisabilité : application au site du bois vert
Souhir Soussou
Geoffroy Alexandre
Jean-Claude Cleyet-Marel
Valérie Guérin
Louis de Lary
02/01/2025
Article
Symbionts of predatory protists are widespread in the oceans and related to animal pathogens
Cell Host & Microbe , 2025 , 33 (2) , pp. 182-199.e7
Fabian Wittmers
Camille Poirier
Charles Bachy
Charlotte Eckmann
Olga Matantseva
Craig Carlson
Stephen Giovannoni
Ursula Goodenough
Alexandra Worden
01/31/2025
Article
A Long‐Term Ecological Research Data Set From the Marine Genetic Monitoring Program ARMS ‐ MBON 2018–2020
Molecular Ecology Resources , 2025
Nauras Daraghmeh
Katrina Exter
Justine Pagnier
Piotr Balazy
Ibon Cancio
Giorgos Chatzigeorgiou
Eva Chatzinikolaou
Maciej Chelchowski
Nathan Alexis Mitchell Chrismas
Thierry Comtet
et al.
01/23/2025
Preprint, Working Paper
The community of Marine Alveolate parasites in the Atlantic inflow to the Arctic Ocean is structured by season, depth and water mass
Elianne Egge
Daniel Vaulot
Aud Larsen
Bente Edvardsen
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