Archives Hal
02/01/2025
Article
Metabolic interdependence and rewiring in radiolaria-microalgae photosymbioses
The International Society of Microbiologial Ecology Journal , 2025 , 19 (1)
Vera Nikitashina
Benjamin Bartels
Joost Samir Mansour
Charlotte Lekieffre
Johan Decelle
Christian Hertweck
Fabrice Not
Georg Pohnert
01/01/2025
Article
Identification of novel H2A histone variants across diverse clades of algae
Genome Biology , 2025 , 26 (1) , pp. 299
Ellyn Rousselot
Zofia Nehr
Jean-Marc Aury
France Denoeud
J. Mark Cock
Leïla Tirichine
Céline Duc
01/01/2025
Preprint, Working Paper
Ten Common Misconceptions About Galaxy (and Why They Are Wrong!)
Wendi Anne Bacon
Sanjay Kumar Srikakulam
Bérénice Batut
Paul Zierep
Anthony Bretaudeau
Björn Grüning
Gildas Le Corguillé
Helge Hecht
John Davis
Hans-Rudolf Hotz
et al.
01/01/2025
Article
Manila clam (Ruditapes philippinarum) in France: Fishing activity, governance and present knowledge challenges regarding its biology and ecology
Estuarine, Coastal and Shelf Science , 2025 , 317 , pp. 109206
Nathalie Caill-Milly
Florence Sanchez
Muriel Lissardy
Noëlle Bru
Claire Kermorvant
Xavier de Montaudouin
Sylvie Lapègue
Florentine Riquet
Ludovic Bouché
Céline d'Hardivillé
et al.
01/01/2025
Article
Sex unfolded: sex, asex, sexes
Journal of Evolutionary Biology , 2025 , 38 (7) , pp. 787-797
Denis Roze
Sylvain Glémin
Thomas Lenormand
Karine van Doninck
01/01/2025
Article
Digital PCR (dPCR) vs. Quantitative PCR (qPCR) approaches for quantification of two Perkinsus species within clam tissue samples
Journal of Invertebrate Pathology , 2025 , 213 , pp. 108417
Elisa Chailler
Héliaz Le Bayon
Annabelle Dairain
Florentine Riquet
Leslie Stout
Aurélie Chambouvet
Morgan Smits
01/01/2025
Article
Evolutionary history and association with seaweeds shape the genomes and metabolisms of marine bacteria
MSphere , 2025 , 10 (6) , pp. e00996--24
Catherine A. Pfister
Johanna Berlinghof
Maximiliana Bogan
Ulisse Cardini
Angelique Gobet
Pauline Hamon-Giraud
Jessica Hart
Natalia Jimenez
Anne Siegel
Emma Stanfield
et al.
01/01/2025
Article
Oyster shells as archives of present and past environmental variability and life history traits: A multi‐disciplinary review of sclerochronology methods and applications
Limnology and Oceanography Letters , 2025 , 10 (2) , pp. 179-199
Vincent Mouchi
C. Fred T. Andrus
Antonio Checa
Mary Elliot
Erika Griesshaber
Niklas Hausmann
Damien Huyghe
Franck Lartaud
Melita Peharda
Niels de Winter
01/01/2025
Article
Natural iron fertilization moderates hydrothermal mercury inputs from arc volcanoes
Environmental Science and Technology , 2025 , 59 (22) , pp. 11039–11050
Natalia Torres-Rodriguez
Jingjing Yuan
Aurélie Dufour
Igor Živković
David Point
Cédric Boulart
Joël Knoery
Milena Horvat
David Amouroux
Sophie Bonnet
et al.
01/01/2025
Article
Adaptive genomic plasticity in large-genome, broad-host-range vibrio phages
The International Society of Microbiologial Ecology Journal , 2025 , 19 (1) , pp. wraf063
Charles Bernard
Yannick Labreuche
Carine Diarra
Pauline Daszkowski
Karine Cahier
David Goudenège
Martin G Lamarche
Gregory B Whitfield
Manon Lang
Jeffrey Valencia
et al.
01/01/2025
Article
Workflow4Metabolomics (W4M): A User-Friendly Metabolomics Platform for Analysis of Mass Spectrometry and Nuclear Magnetic Resonance Data
Current Protocols , 2025 , 5 (2) , pp. e70095
Cédric Delporte
Marie Tremblay-Franco
Yann Guitton
Cécile Canlet
Ralf J. M. Weber
Helge Hecht
Elliott James Price
Jana Klánová
Charlotte Joly
Céline Dalle
et al.
01/01/2025
Article
Year-round quantification, structure and dynamics of epibacterial communities from diverse macroalgae reveal a persistent core microbiota and strong host specificities
Environmental Microbiology Reports , 2025
Maéva Brunet
Nolwen Le Duff
Tristan Barbeyron
François Thomas
01/01/2025
Article
Identification and Characterization of a New Thermophilic κ‑Carrageenan Sulfatase
Journal of Agricultural and Food Chemistry , 2025 , 73 , pp. 2044 - 2055
Nanna Rhein-Knudsen
Diego S Reyes-Weiss
Leesa J Klau
Alexandra Jeudy
Thomas Roret
Runar Stokke
Vincent G H Eijsink
Finn L Aachmann
Mirjam Czjzek
Svein Jarle Horn
20/12/2024
Article
Identification and Characterization of Two Aryl Sulfotransferases from Deep-Sea Marine Fungi and Their Implications in the Sulfation of Secondary Metabolites
Marine drugs , 2024 , 22 (12) , pp. 572
Nicolas Graziano
Beatriz Arce-López
Tristan Barbeyron
Ludovic Delage
Elise Gerometta
Catherine Roullier
Gaëtan Burgaud
Elisabeth Poirier
Laure Martinelli
Jean-Luc Jany
et al.
18/12/2024
Preprint, Working Paper
Long-term survey of intertidal rocky shore macrobenthic community metabolism and structure after primary succession
Aline Migné
François Bordeyne
D Davoult
18/12/2024
Article
Polar diatoms fade in the twilight zone
Nature Geoscience , 2024 , 18 (1) , pp. 5-6
Natalia Llopis Monferrer
13/12/2024
Ouvrage
Utilisation de l'imagerie hyperspectrale par vecteur drone
Charles Verpoorter
Laurent Brutier
Augustin Leprêtre
François Gevaert
Florian Douay
Aline Migné
Nicolas Spilmont
Gwendoline Duong
01/12/2024
Article
A step in the deep evolution of Alvinellidae (Annelida: Polychaeta): A phylogenomic comparative approach based on transcriptomes
Molecular Phylogenetics and Evolution , 2024 , 201 , pp. 108207
Pierre-Guillaume Brun
Stephane Hourdez
Marion Ballenghien
Yadong Zhou
Jean Mary
Didier Jollivet
28/11/2024
Article
Recovery after exploitation of stalked barnacles is facilitated by the presence of conspecifics: a study of post-harvest gap recolonization dynamics in SW Europe
Reviews in Fish Biology and Fisheries , 2024
Víctor Gómez-del Campo
Julio Arrontes
Teresa Cruz
Elsa Vázquez
Gonzalo Macho
Eric Thiébaut
Katja Geiger
Joana Fernandes
David Jacinto
Alba Aguión
et al.
27/11/2024
Article
Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems
Cell , 2024 , 187 (24) , pp. 6943-6965
France Denoeud
Olivier Godfroy
Corinne Cruaud
Svenja Heesch
Zofia Nehr
Nachida Tadrent
Arnaud Couloux
Loraine Brillet-Guéguen
Ludovic Delage
Dean Mckeown
et al.
27/11/2024
Preprint, Working Paper
Gelatinous matrix, an original strategy to cope with oligotrophy in Nassellaria (Radiolaria)
Natalia Llopis Monferrer
Sarah Romac
Manon Laget
Yasuhide Nakamura
Tristan Biard
Miguel Sandin
27/11/2024
Preprint, Working Paper
Phago-mixotrophy of small eukaryotic phytoplankton might alleviate iron limitation in HNLC Southern Ocean
Denise Rui Ying Ong
Andrés Gutiérrez-Rodríguez
Karl Safi
Dominique Marie
Karen Selph
Michael Stukel
Moira Décima
Adriana Lopes dos Santos
25/11/2024
Article
How marine are Marine Stramenopiles (MAST)? A cross-system evaluation
FEMS Microbiology Ecology , 2024 , 100 (11) , pp. fiae130
Aleix Obiol
Javier del Campo
Colomban de Vargas
Frédéric Mahé
Ramon Massana
22/11/2024
Article
Postembryonic Maintenance of Nephron Progenitor Cells with Low Translational Activity in the Chondrichthyan Scyliorhinus canicula
Journal of the American Society of Nephrology , 2024
Yasmine Lund-Ricard
Julien Calloch
Virginie Glippa
Sam Vandenplas
Ann Huysseune
P. Eckhard Witten
Julia Morales
Agnès Boutet
20/11/2024
Poster
Construction d'un jeu de données biogéochimique en Méditerranée nord occidentale consolidé en suivant les principes FAIR,Construction of a biogeochemical dataset in the north-western Mediterranean consolidated following FAIR principles
Aurélien Schmitt
Mark Hoebeke
14/11/2024
Preprint, Working Paper
CarboTag: a modular approach for live and functional imaging of plant cell walls
Maarten Besten
Milan Hendriksz
Lucile Michels
Bénédicte Charrier
Elwira Smakowska-Luzan
Dolf Weijers
Jan Willem Borst
Joris Sprakel
14/11/2024
Preprint, Working Paper
Marine bacterial enrichment in the sea surface microlayer, and surface taxa aerosolization potential in the Western Mediterranean Sea
Julie Dinasquet
Birthe Zäncker
Alessia Nicosia
Estelle Bigeard
Anne-Claire Baudoux
Anja Engel
Cecile Guieu
Ingrid Obernosterer
Karine Sellegri
12/11/2024
Article
The physical and mechanical consequences of incorporating industrial residues into mortar and concrete mixtures for eco-friendly marine constructions
Innovative Infrastructure Solutions , 2024 , 9 (12) , pp. 466
Naily Nashira Figueroa
Antonio Brante
Jean-Charles Leclerc
Pablo Salgado
Claudio Oyarzo-Vera
08/11/2024
Preprint, Working Paper
Role of transcription and translation during the early development of the brown alga Ectocarpus
Daniel Liesner
Rémy Luthringer
Sébastien Colin
Julia Morales
J. Mark Cock
Susana Coelho
01/11/2024
Article
Plant and algal lipidomes: Analysis, composition, and their societal significance
Progress in Lipid Research , 2024 , 96 , pp. 101290
Juliette Jouhet
Eliana Alves
Yohann Boutté
Sylvain Darnet
Frédéric Domergue
Thierry Durand
Pauline Fischer
Laetitia Fouillen
Mara Grube
Jérôme Joubès
et al.
31/10/2024
Article
Benthic foraminifera as bio-indicators of natural and anthropogenic conditions in Roscoff Aber Bay (Brittany, France)
PLoS ONE , 2024 , 19 (10) , pp. e0309463
Edwin Daché
Pierre-Antoine Dessandier
Ranju Radhakrishnan
Valentin Foulon
Loïc Michel
Colomban de Vargas
Jozée Sarrazin
Daniela Zeppilli
15/10/2024
Article
MUM, a maternal unknown message, inhibits early establishment of the medio-lateral axis in the embryo of the kelp Saccharina latissima
Development (Cambridge, England) , 2024 , 151 (20)
Samuel Boscq
Bernard Billoud
Ioannis Theodorou
Tanweer Joemmanbaks
Tanguy Dufourt
Bénédicte Charrier
14/10/2024
Preprint, Working Paper
Chromosome-scale genome assembly and gene annotation of the hydrothermal vent annelid Alvinella pompejana yield insight into animal evolution in extreme environments
Sami El Hilali
Philippe Dru
Alan Le Moan
Yang Li
Martijn Huynen
André Hoelz
Robert Robinson
José Martín-Durán
Didier Jollivet
Adam Claridge-Chang
et al.
10/10/2024
Article
Candidate genes involved in biosynthesis and degradation of the main extracellular matrix polysaccharides of brown algae and their probable evolutionary history
BMC Genomics , 2024 , 25 (1) , pp. 950
Lisa Mazéas
Ahlem Bouguerba-Collin
J. Mark Cock
France Denoeud
Olivier Godfroy
Loraine Brillet-Guéguen
Tristan Barbeyron
Agnieszka Lipinska
Ludovic Delage
Erwan Corre
et al.
03/10/2024
Article
Light color regulation of photosynthetic antennae biogenesis in marine phytoplankton
Plant and Cell Physiology , 2024
David M. Kehoe
Avijit Biswas
Bo Chen
Louison Dufour
Théophile Grébert
Allissa M. Haney
Kes Lynn Joseph
Indika Kumarapperuma
Adam A. Nguyen
Morgane Ratin
et al.
01/10/2024
Article
Disentangling the effect of space, time, and environmental and anthropogenic drivers on coastal macrobenthic β diversity in contrasting habitats over 15 years
Science of the Total Environment , 2024 , 946 , pp. 173919
Chirine Toumi
Olivier Gauthier
Jacques Grall
Éric Thiébaut
Aurélien Boyé
01/10/2024
Article
O short-branch Microsporidia, where art thou? Identifying diversity hotspots for future sampling
European Journal of Protistology , 2024 , 96 , pp. 126119
Megan Gross
Ľubomír Rajter
Frédéric Mahé
David Bass
Cédric Berney
Nicolas Henry
Colomban de Vargas
Micah Dunthorn
28/09/2024
Article
Chromosome-level genome assembly of the bay scallop Argopecten irradians
Scientific Data , 2024 , 11 (1) , pp. 1057
Denis Grouzdev
Emmanuelle Pales Espinosa
Stephen Tettelbach
Sarah Farhat
Arnaud Tanguy
Isabelle Boutet
Nadège Guiglielmoni
Jean-François Flot
Harrison Tobi
Bassem Allam
27/09/2024
Article
“Pink power”—the importance of coralline algal beds in the oceanic carbon cycle
Nature Communications , 2024 , 15 (1) , pp. 8282
Nadine Schubert
Fernando Tuya
Viviana Peña
Paulo Horta
Vinícius Salazar
Pedro Neves
Cláudia Ribeiro
Francisco Otero-Ferrer
Fernando Espino
Kathryn Schoenrock
et al.
24/09/2024
Poster
ILLUMINATING THE DARK KINOME: PRKY MODELING AND VIRTUAL SCREENING
Theo Werth
Morgan Lelievre
Stephane Bach
Thomas Robert
Alban Lepailleur
Johanna Giovannini
19/09/2024
Article
Positive species interactions structure rhodolith bed communities at a global scale
Biological Reviews , 2024 , 907 , pp. 167526
Fabio Bulleri
Nadine Schubert
Jason Hall-Spencer
Daniela Basso
Heidi Burdett
Ronaldo Francini-Filho
Jacques Grall
Paulo Horta
Nicholas Kamenos
Sophie Martin
et al.
18/09/2024
Article
Photophysiology of the haploid form of the cryptophyte Teleaulax amphioxeia
Journal of Phycology , 2024 , 60 (5) , pp. 1220-1236
Sarah Garric
Morgane Ratin
Benoit Gallet
Johan Decelle
Ian Probert
Francisco Rodriguez
Christophe Six
17/09/2024
Article
Constrained Catalytic Itinerary of a Retaining 3,6-Anhydro-D-Galactosidase, a Key Enzyme in Red Algal Cell Wall Degradation
Angewandte Chemie International Edition , 2024 , pp. Online ahead of print
Michael Wallace
Irene Cuxart
Thomas Roret
Laura Guée
Aleksandra Debowski
Mirjam Czjzek
Carme Rovira
Keith Stubbs
Elizabeth Ficko-Blean
11/09/2024
Article
SusC/D-like proteins in Gammaproteobacteria that utilize fructans
Journal of Cell Science , 2024 , 137 (11)
Marie-Katherin Zühlke
Alexandra Bahr
Daniel Bartosik
Vipul Solanki
Michelle Teune
Frank Unfried
Tristan Barbeyron
Elizabeth Ficko-Blean
Lionel Cladière
Alexandra Jeudy
et al.
09/09/2024
Article
Development and validation of a 66K SNP array for the hard clam (Mercenaria mercenaria)
BMC Genomics , 2024 , 25 (1) , pp. 847
Denis Grouzdev
Sarah Farhat
Ximing Guo
Emmanuelle Pales Espinosa
Kimberly Reece
Jan Mcdowell
Huiping Yang
Gregg Rivara
Joshua Reitsma
Antoinette Clemetson
et al.
04/09/2024
Article
Global distribution, diversity, and ecological niche of Picozoa, a widespread and enigmatic marine protist lineage
Microbiome , 2024 , 12 (1) , pp. 162
Paula Huber
Daniele de Angelis
Hugo Sarmento
Sebastian Metz
Caterina Giner
Colomban De Vargas
Luigi Maiorano
Ramon Massana
Ramiro Logares
03/09/2024
Article
Post-fire Recovery Dynamics and Resilience of Ecosystem Services Capacity in Mediterranean-Type Ecosystems
Ecosystems , 2024 , 27 (6) , pp. 833-847
Philip Roche
C. Sylvie Campagne
Anne Ganteaume
01/09/2024
Article
A hydrothermal plume on the Southwest Indian Ridge revealed by a multi-proxy approach: Impact on iron and manganese distributions (GEOTRACES GS02)
Marine Chemistry , 2024 , pp. 104401
Corentin Baudet
Eva Bucciarelli
Géraldine Sarthou
Cédric Boulart
Ewan Pelleter
Millie Goddard-Dwyer
Hannah Whitby
Rui Zhang
Ingrid Obernosterer
David Gonzalez-Santana
et al.
28/08/2024
Comm. dans un congrès
Modifying positions 2 or 8 of the imidazo[1,2-a]pyrazine lead compound CTN1122 affects its antileishmanial activity, L-CK1.2 kinase inhibition, and safety profile
Lhana Tisseur
Marc-Antoine Bazin
Sandrine Cojean
Fabrice Pagniez
Cédric Logé
Guillaume Bernadat
Christian Cavé
Isabelle Ourliac-Garnier
Carine Picot
Olivier Leclercq
et al.
13/08/2024
Preprint, Working Paper
Ubiquity of inverted ’gelatinous’ ecosystem pyramids in the global ocean
Lombard Fabien
Guidi Lionel
Manoela Brandão
Coelho Luis Pedro
Colin Sébastien
Dolan John Richard
Elineau Amanda
Josep Gasol
Grondin Pierre Luc
Henry Nicolas
et al.
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