Hal Archives
01/01/2022
Article
Carbon and nitrogen uptake through photosynthesis and feeding by photosymbiotic Acantharia
Open Research Europe , 2022 , 2 , pp. 120
Joost Samir Mansour
Per Juel Hansen
Cédrix Leroux
Fabrice Not
01/01/2022
Chapître d'ouvrage
Phytoplankton diversity and ecology through the lens of high throughput sequencing technologies
, 2022 , pp. 353-413
Adriana Lopes dos Santos
Catherine Gérikas Ribeiro
Denise Ong
Laurence Garczarek
Xiao Li Shi
Scott Nodder
Daniel Vaulot
Andres Gutiérrez-Rodríguez
01/01/2022
Article
EukProt: A database of genome-scale predicted proteins across the diversity of eukaryotes
Peer Community Journal , 2022 , 2 , pp. e56
Daniel Richter
Cédric Berney
Jürgen Strassert
Yu-Ping Poh
Emily Herman
Sergio Muñoz-Gómez
Jeremy Wideman
Fabien Burki
Colomban de Vargas
01/01/2022
Article
Combined effects of ocean warming and acidification on the larval stages of the European abalone Haliotis tuberculata
Marine Pollution Bulletin , 2022 , 175 , pp. 113131
Javid Kavousi
Sabine Roussel
Sophie Martin
Fanny Gaillard
Aicha Badou
Carole Di Poi
Sylvain Huchette
Philippe Dubois
Stéphanie Auzoux-Bordenave
01/01/2022
Article
N2 fixation in the Mediterranean Sea related to the composition of the diazotrophic community, and impact of dust under present and future environmental conditions.
Biogeosciences , 2022 , 19 (2) , pp. 415-435
Céline Ridame
Julie Dinasquet
Søren Hallstrøm
Estelle Bigeard
Lasse Riemann
France van Wambeke
Matthieu Bressac
Elvira Pulido-Villena
Vincent Taillandier
Fréderic Gazeau
et al.
01/01/2022
Article
Coping with poachers in European stalked barnacle fisheries
Marine Policy , 2022 , 135 , pp. 104826
Katja Geiger
Antonella Rivera
Alba Aguión
Jorge Álvarez
Julio Arrontes
yaisel Juan Borrell
Teresa Cruz
Dominique Davoult
Jesús Dubert
Marieke Feis
et al.
01/01/2022
Article
metaPR 2 : A database of eukaryotic 18S rRNA metabarcodes with an emphasis on protists
Molecular Ecology Resources , 2022
Daniel Vaulot
Clarence Wei Hung Sim
Denise Ong
Bryan Teo
Charlie Biwer
Mahwash Jamy
Adriana Lopes dos Santos
01/01/2022
Article
Introgression between highly divergent sea squirt genomes: an adaptive breakthrough?
Peer Community Journal , 2022 , 2 , pp. e54
Christelle Fraïsse
Alan Le Moan
Camille Roux
Guillaume Dubois
Claire Daguin-Thiébaut
Pierre-Alexandre Gagnaire
Frédérique Viard
Nicolas Bierne
01/01/2022
Article
The phycoerythrobilin isomerization activity of MpeV in Synechococcus sp. WH8020 is prevented by the presence of a histidine at position 141 within its phycoerythrin-I β-subunit substrate
Frontiers in Microbiology , 2022 , 13 , pp. 1011189
Lyndsay A Carrigee
Jacob P Frick
Xindi Liu
Jonathan A Karty
Jonathan C Trinidad
Irin P Tom
Xiaojing Yang
Louison Dufour
Frédéric Partensky
Wendy M. Schluchter
01/01/2022
Article
Siliceous Rhizaria abundances and diversity in the Mediterranean Sea assessed by combined imaging and metabarcoding approaches
Frontiers in Marine Science , 2022 , 9 , pp. 14p. :
Natalia Llopis Monferrer
Tristan Biard
Miguel Sandin
Fabien Lombard
Marc Picheral
Amanda Elineau
Lionel Guidi
Aude Leynaert
Paul Tréguer
Fabrice Not
01/01/2022
Article
Viability, efficiency, resilience and equity: using very diverse indicators to deal with uncertainties of future events
Environmental Science & Policy , 2022 , 138 , pp. 56-75
Sophie Martin
Katrin Erdlenbruch
Isabelle Alvarez
Sylvie Huet
Charline Smadi
01/01/2022
Article
Crystal structure and molecular mechanism of an E/F type bilin lyase-isomerase
Structure , 2022 , 30 (4) , pp. 564-574.E3
Indika Kumarapperuma
Kes Lynn Joseph
Cong Wang
Linta Biju
Irin Tom
Kourtney Weaver
Théophile Grébert
Frédéric Partensky
Wendy Schluchter
Xiaojing Yang
01/01/2022
Article
Inter-Specific Genetic Exchange Despite Strong Divergence in Deep-Sea Hydrothermal Vent Gastropods of the Genus Alviniconcha
Genes , 2022 , 13 (6) , pp. 985
Jade Castel
Stéphane Hourdez
Florence Pradillon
Claire Daguin-Thiébaut
Marion Ballenghien
Stéphanie Ruault
Erwan Corre
Adrien Tran Lu Y
Jean Mary
Pierre-Alexandre Gagnaire
et al.
01/01/2022
Article
Water eDNA metabarcoding is effective in detecting non-native species in marinas, but detection errors still hinder its use for passive monitoring
Biofouling , 2022
Marjorie Couton
Laurent Lévêque
Claire Daguin-Thiébaut
Thierry Comtet
Frédérique Viard
01/01/2022
Article
Subtle limits to connectivity revealed by outlier loci within two divergent metapopulations of the deep-sea hydrothermal gastropod Ifremeria nautilei
Molecular Ecology , 2022 , 31 (10) , pp. 2796-2813
Adrien Tran Y. Lu
Stephanie Ruault
Claire Daguin-Thiébaut
Jade Castel
Nicolas Bierne
Thomas Broquet
Patrick Wincker
Aude Perdereau
Sophie Arnaud-Haond
Pierre-Alexandre Gagnaire
et al.
01/01/2022
Article
Genomic patterns of divergence in the early and late steps of speciation of the deep-sea vent thermophilic worms of the genus Alvinella
BMC Ecology and Evolution , 2022 , 22 , pp. 106
Camille Thomas-Bulle
Denis Bertrand
Niranjan Nagarajan
Richard R Copley
Erwan Corre
Stephane Hourdez
Éric Bonnivard
Adam Claridge-Chang
Didier Jollivet
01/01/2022
Article
Pollution gradient leads to local adaptation and small-scale spatial variability of communities and functions in an urban marine environment
Science of the Total Environment , 2022 , 838 (1) , pp. 155911
Robin P.M. Gauff
Dominique Davoult
Stephane Greff
Olivier Bohner
Jérôme Coudret
Stéphanie Jacquet
Stéphane Loisel
Simon Rondeau
Laure Sevin
Emmanuel Wafo
et al.
01/01/2022
Article
The relative contribution of fleshy epiphytic macroalgae to the production of temperate maerl (rhodolith) beds
Marine Ecology Progress Series , 2022 , 693 , pp. 69-82
Zn Qui-Minet
Dominique Davoult
Jacques Grall
Sophie Martin
01/01/2022
Article
Multiple photolyases protect the marine cyanobacterium Synechococcus from ultraviolet radiation
mBio , 2022 , 13 (4) , pp. 01511-22
Allissa Haney
Joseph Sanfilippo
Laurence Garczarek
Frédéric Partensky
David Kehoe
01/01/2022
Article
Balanced Polymorphism at the Pgm-1 Locus of the Pompeii Worm Alvinella pompejana and Its Variant Adaptability Is Only Governed by Two QE Mutations at Linked Sites
Genes , 2022 , 13 (2) , pp. 206
Alexis Bioy
Anne-Sophie Le Port
Emeline Sabourin
Marie Verheye
Patrice Piccino
Baptiste Faure
Stephane Hourdez
Jean Mary
Didier Jollivet
12/09/2021
Article
Low Transcriptomic Plasticity of Antarctic Giant Isopod Glyptonotus antarcticus Juveniles Exposed to Acute Thermal Stress
Frontiers in Marine Science , 2021 , 8
Marcelo González-Aravena
Rodolfo Rondon
Alejandro Font
César A Cárdenas
Jean-yves Toullec
Erwan Corre
Kurt Paschke
12/01/2021
Article
Annual phytoplankton dynamics in coastal waters from Fildes Bay, Western Antarctic Peninsula
Scientific Reports , 2021 , 11 (1) , pp. 1368
Nicole Trefault
Rodrigo de La Iglesia
Mario Moreno-Pino
Adriana Lopes dos Santos
Catherine Gérikas Ribeiro
Génesis Parada-Pozo
Antonia Cristi
Dominique Marie
Daniel Vaulot
12/01/2021
Article
Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp
BMC Biology , 2021 , 19 (1)
Sarah Farhat
Phuong Le
Ehsan Kayal
Benjamin Noel
Estelle Bigeard
Erwan Corre
Florian Maumus
Isabelle Florent
Adriana A. Alberti
Jean-Marc Aury
et al.
12/01/2021
Article
Macroscale patterns of oceanic zooplankton composition and size structure
Scientific Reports , 2021 , 11 (1)
Manoela Brandão
Fabio Benedetti
Séverine Martini
Yawouvi Dodji Soviadan
Jean-Olivier Irisson
Jean-Baptiste Romagnan
Amanda Elineau
Corinne Desnos
Laëtitia Jalabert
Andrea Freire
et al.
12/01/2021
Article
High and specific diversity of protists in the deep-sea basins dominated by diplonemids, kinetoplastids, ciliates and foraminiferans
Communications Biology , 2021 , 4 (1) , pp. 501
Alexandra Schoenle
Manon Hohlfeld
Karoline Hermanns
Frédéric Mahé
Colomban de Vargas
Frank Nitsche
Hartmut Arndt
11/29/2021
Preprint, Working Paper
Seasonal temporal dynamics of marine protists communities in tidally mixed coastal waters
Mariarita Caracciolo
Fabienne Rigaut-Jalabert
Sarah Romac
Frédéric Mahé
Samuel Forsans
Jean-Philippe Gac
Laure Arsenieff
Maxime Manno
Samuel Chaffron
Thierry Cariou
et al.
11/19/2021
Preprint, Working Paper
Rocky tidal pools: carbonate chemistry, diurnal variability and calcifying organisms in future high-CO2 conditions
Narimane Dorey
Sophie Martin
Lester Kwiatkowski
11/15/2021
Article
Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean
Nature Microbiology , 2021 , 6 (12) , pp. 1561-1574
Marta Royo-Llonch
Pablo Sánchez
Clara Ruiz-González
Guillem Salazar
Carlos Pedrós-Alió
Marta Sebastián
Karine Labadie
Lucas Paoli
Federico M. Ibarbalz
Lucie Zinger
et al.
11/09/2021
Autre document
Prokaryotes/Eukaryotes 16S-V4V5 rRNA Metabarcoding PCR protocol for NGS Illumina sequencing V.2
Sarah Romac
11/08/2021
Article
Humoral response to a third injection of BNT162b2 vaccine in patients on maintenance haemodialysis
Clinical Kidney Journal , 2021 , 14 (11) , pp. 2349-2355
Marine Dekervel
Nicolas Henry
Massimo Torreggiani
Lise-Marie Pouteau
Jean-Paul Imiela
Chloé Mellaza
Anne-Sophie Garnier
Amaury Dujardin
Marine Asfar
Alexandra Ducancelle
et al.
11/01/2021
Article
Bioluminescence and Photoreception in Unicellular Organisms: Light-Signalling in a Bio-Communication Perspective
International Journal of Molecular Sciences , 2021 , 22 (21) , pp. 11311
Youri Timsit
Magali Lescot
Martha Valiadi
Fabrice Not
11/01/2021
Article
Greater functional similarity in mobile compared to sessile assemblages colonizing artificial coastal habitats
Marine Pollution Bulletin , 2021 , 172 , pp. 112844
Naily Nashira Figueroa
Antonio Brante
Frédérique Viard
Jean-Charles Leclerc
11/01/2021
Comm. dans un congrès
Reconstitution de provenance de coquilles d'huîtres archéologiques à partir de l'étude de la composition chimique élémentaire et isotopique
Marie Pesnin
Vincent Mouchi
Vianney Forest
Catherine Dupont
Laurent Emmanuel
10/29/2021
Article
Comparative genomic and transcriptomic analyses of transposable elements in polychaetous annelids highlight LTR retrotransposon diversity and evolution
Mobile DNA , 2021 , 12 (1) , pp. 24
Jonathan Filée
Sarah Farhat
Dominique Higuet
Laure Teysset
Dominique Marie
Camille Thomas-Bulle
Stephane Hourdez
Didier Jollivet
Eric Bonnivard
10/27/2021
Poster
Genomic adaptation of Pelagomonas calceolata to temperate iron-poor oceans revealed by a chromosome-scale assembled genome
Nina Guérin
Quentin Carradec
Marta Ciccarella
Elisa Flamant
Sophie Mangenot
Benjamin Istace
Benjamin Noel
Sarah Romac
Charles Bachy
Eric Pelletier
et al.
10/06/2021
Article
Author Correction: Macroscale patterns of oceanic zooplankton composition and size structure
Scientific Reports , 2021 , 11 (1) , pp. 20226
Manoela Brandão
Fabio Benedetti
Séverine Martini
Yawouvi Dodji Soviadan
Jean-Olivier Irisson
Jean-Baptiste Romagnan
Amanda Elineau
Corinne Desnos
Laëtitia Jalabert
Andrea Freire
et al.
10/01/2021
Article
Structure-Based Functional Analysis of a Hormone Belonging to an Ecdysozoan Peptide Superfamily: Revelation of a Common Molecular Architecture and Residues Possibly for Receptor Interaction
International Journal of Molecular Sciences , 2021 , 22 (20) , pp. 11142
Yun-Ru Chen
Nai-Wan Hsiao
Yi-Zong Lee
Shiau-Shan Huang
Chih-Chun Chang
Jyuan-Ru Tsai
Hui-Chen Lin
Jean-Yves Toullec
Chi-Ying Lee
Ping-Chiang Lyu
09/22/2021
Preprint, Working Paper
N<sub>2</sub> fixation in the Mediterranean Sea related to the composition of the diazotrophic community, and impact of dust under present and future environmental conditions
, 2021 , pp. 415–435
Céline Ridame
Julie Dinasquet
Søren Hallstrøm
Estelle Bigeard
Lasse Riemann
France van Wambeke
Matthieu Bressac
Elvira Pulido-Villena
Vincent Taillandier
Frédéric Gazeau
et al.
09/21/2021
Autre document
Construction of individual ddRAD libraries v1
Claire Daguin Thiebaut
Stephanie Ruault
Charlotte Roby
Thomas Broquet
Frédérique Viard
Alan Brelsford
09/13/2021
Article
Marine Synechococcus Picocyanobacteria: Light Utilization Across Latitudes
Proceedings of the National Academy of Sciences of the United States of America , 2021 , 118 (38) , pp. e2111300118
Christophe Six
Morgane Ratin
Dominique Marie
Erwan Corre
09/12/2021
Poster
Hemoglobins are a keystone adaptation for deep-sea hydrothermal vent scaleworms
Victor Le Layec
Stephane Hourdez
09/07/2021
Article
Does the environmental history of mussels have an effect on the physiological response to additional stress under experimental conditions?
Science of the Total Environment , 2021 , 806 (Part 1) , pp. 149925
Isabelle Boutet
Camille Lacroix
Simon Devin
Arnaud Tanguy
Dario Moraga
Michel Auffret
09/01/2021
Rapport
La surveillance de la biodiversité ichtyologique côtière par l'ADN environnemental : Évaluation de l'outil et de sa complémentarité aux comptages visuels en plongée - Rapport final, septembre 2021
, 2021 , pp. 85 pages + annexes
Anaïs Rey
Frédérique Viard
Erwan Corre
Anne Lizé
Laurent Lévêque
Anna Le Joncour
Marine Delesalle
Alexandre Robert
Pierre Daniel Thiriet
09/01/2021
Article
Acid-base balance in the haemolymph of European abalone (Haliotis tuberculata) exposed to CO2-induced ocean acidification
Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology , 2021 , 259 , pp. 110996
Stéphanie Auzoux-Bordenave
Sandra Chevret
Aïcha Badou
Sophie Martin
Sarah Di Giglio
Philippe Dubois
09/01/2021
Article
The Chemistry of Hyperalkaline Springs in Serpentinizing Environments: 1. The Composition of Free Gases in New Caledonia Compared to Other Springs Worldwide
Journal of Geophysical Research: Biogeosciences , 2021 , 126 (9)
Christophe Monnin
Marianne Quéméneur
Roy Price
Julie Jeanpert
Pierre Maurizot
Cédric Boulart
Jean‐pierre Donval
Bernard Pelletier
09/01/2021
Article
Acid–base balance in the hæmolymph of European abalone (Haliotis tuberculata) exposed to CO2-induced ocean acidification
Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology , 2021 , 259 , pp. 110996
Stéphanie Auzoux-Bordenave
Sandra Chevret
Aïcha Badou
Sophie Martin
Sarah Di Giglio
Philippe Dubois
08/02/2021
Preprint, Working Paper
Dynamics of Fucus serratus thallus photosynthesis and community primary production during emersion across seasons: canopy dampening and biochemical acclimation
Aline Migné
Gwendoline Duong
Dominique Menu
Dominique Davoult
François Gévaert
08/01/2021
Article
Hemiselmis aquamarina sp. nov. (Cryptomonadales, Cryptophyceae), A Cryptophyte with A Novel Phycobiliprotein Type (Cr-PC 564)
Protist , 2021 , 172 (4) , pp. 125832
Karoline Magalhães
Adriana Lopes Santos
Daniel Vaulot
Mariana Cabral Oliveira
07/12/2021
Article
Dinophyceae can use exudates as weapons against the parasite Amoebophrya sp. (Syndiniales)
ISME Communications , 2021 , 1 (1)
Marc Long
Dominique Marie
Jeremy Szymczak
Jordan Toullec
Estelle Bigeard
Marc Sourisseau
Mickael Le Gac
Laure Guillou
Cécile Jauzein
07/12/2021
Article
pr2-primers: an 18S rRNA primer database for protists
Molecular Ecology Resources , 2021
Daniel Vaulot
Stefan Geisen
Frédéric Mahé
David Bass
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