Created 16/02/2018 Updated 20/09/2022
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Peer reviewed articles

Monopartner

  • Alonso-Sáez L, Palacio AS, Cabello AM, Robaina-Estévez S, González JM, Garczarek L, López-Urrutia A (submitted). Transcriptional mechanisms of thermal acclimation in Prochlorococcus. Submitted to ISME J.
  • Bonnet S., Benavides M., Le Moigne F.A.C, Camps M., Torremocha A., Grosso O., Spungin D., Berman-Frank I., Garczarek L. and Cornejo-Castillo F.M. (2022). Massive export of diazotrophs across the tropical south Pacific Ocean. bioRxiv preprint doi: https://doi.org/10.1101/2021.05.07.442706; in press in ISME J.
  • Haney A. M., Sanfilippo J.E., Garczarek L., Partensky P., and Kehoe D.M. (2022). DNA Photolyases provide important protection from UV radiation in the marine picophytoplankton Synechococcus. mBio 13(4). https://doi.org/10.1128/mbio.01511-22.
  • Grébert T., Garczarek L., Daubin V., Humily F., Marie D., Ratin M., Devailly A., Farrant G. K., Mary I., Mella-Flores D., Tanguy G., Labadie K., Wincker P., Kehoe D.M. and Partensky F. (2022). Diversity and evolution of pigment types and the phycobilisome rod gene region of marine Synechococcus cyanobacteria. Genome Biology and Evolution 111: evac035, https://doi.org/10.1093/gbe/evac035.
  • Grébert T., Nguyen A.A., Pokhrel S., Joseph K.L., Ratin M., Dufour L., Chen B., Haney A.M., Trinidad J., Karty J.A., Trinidad J.C., Garczarek L., Schluchter W.M., Kehoe D.M. & Partensky F. (2021). Molecular basis of an alternative dual-enzyme system for light color acclimation of marine Synechococcus cyanobacteria. Proc Natl Acad Sci USA. 2021 118 (9). https://doi.org/10.1073/pnas.2019715118 63.
  • Carrigee LA, Frick JP, Karty JA, Garczarek L, Partensky F, and Schluchter WM. (2021). MpeV is the Lyase isomerase for the doubly-linked phycourobilin on the β-subunit of phycoerythrin I & II in marine Synechococcus. Journal of Biological Chemistry. https://doi.org/10.1074/jbc.RA120.015289.
  • Holtrop T, Huisman J, Stomp M, Aert J, Grébert T, Partensky F, Garczarek L& Jan van der Woerd H. (2020). H2O’s molecular vibrations shed light on spectral niches for photosynthesis in lakes and oceans. Nature Ecology and Evolution 5:55-66. https://doi.org/10.1038/s41559-020-01330-x.
  • Palacio AS, Cabello AM, García FC, Labban A, Morán XAG, Garczarek L, Alonso-Sáez L and López-Urrutia A. (2020). Changes in population age-structure obscure the temperature-size rule in marine cyanobacteria. Frontiers in Microbiology section Aquatic Microbiology. Vol 11, Art 2059, https://doi.org/10.3389/fmicb.2020.02059.
  • Breton S, Jouhet J, Guyet U, Gros V, Pittera J, Demory D, Partensky F, Doré H, Ratin M, Maréchal E, Nguyen NA, Garczarek L & Six C. (2020). Unveiling membrane thermoregulation strategies in marine picocyanobacteria. New Phytologist 225: 2396–2410, https://doi.org/10.1111/nph.16239.
  • Sanfilippo JE, Nguyen AA, Garczarek L, Karty JA, Pokhrel S, Strnat JA, Partensky F, Schluchter WM, and Kehoe DM. (2019). Interplay between differentially expressed enzymes contributes to light color acclimation in marine Synechococcus. Proc Natl Acad Sci USA 116 (13) 6457-6462; https://doi.org/10.1073/pnas.1810491116.
     

Multipartners

  • Doré H., Breton S., Pittera J., Hoebeke M., Corre M., Ratin M., Scanlan D.J., Partensky F., Six C. and Garczarek L. (2022). Global distribution of marine Synechococcus populations in coastal areas from Ocean Sampling Day metagenomes. bioRxiv preprint doi: https://doi.org/10.1101/2022.08.17.504260; in revision for mSystems).
  • Doré F, Guyet U, Farrant GK, Ratin M, Ostrowski M, Lecorguillé G, Corre E, Labadie K, Aury JM, Wincker P, Eveillard D, Scanlan DJ, Partensky F and Garczarek L. (2022). Global distribution of Synechococcus and Prochlorococcus gene repertoires reveals adaptive strategies of picocyanobacterial communities. BioRxiv preprint doi: https://doi.org/10.1101/2022.08.17.504260; submitted to ISME J.)
  • Ferrieux M., Dufour L., Ratin M., Leconte J., Guéneuguès A., Chasselin L., Sciandra T., Doré H., Monier G., Della-Negra O., Guyet U., Siltanen J., Hoebeke M., Corre E., Xia X., Liu H., Six C., Bouget F.-Y., Blain S., Partensky F. and Garczarek L. (2022). Comparative thermophysiology of the low-iron adapted marine Synechococcus CRD1 strains. Frontiers in Microbiology 13:893413. https://doi.org/10.3389/fmicb.2022.893413.
  • Garczarek L, Guyet U, Doré H, Farrant GK, Hoebeke M, Brillet-Guéguen L, Bisch A, Ferrieux M., Siltanen J., Corre E, Le Corguillé G, Caron C, Ratin M, Pitt FD, Ostrowski M, Conan M, Siegel A, Labadie K, Aury JM, Wincker P, Scanlan DJ and Partensky F. (2021). Cyanorak v2.1: a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes. NAR Database issue https://doi.org/10.1093/nar/gkaa958.
  • Doré H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt F, Ostrowski M, Six C, Brillet-Guéguen L, Hoebeke M, Bisch A, Lecorguillé G, Corre E, Labadie K, Aury JM, Wincker P, Dong HC, Jae HN, Eveillard D, Scanlan DJ, Partensky F and Garczarek L. (2020). Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria. Frontiers in Microbiology 11: 567431. https://doi.org/10.3389/fmicb.2020.567431.
  • Guyet U, Nguyen NA, Doré H, Haguait J, Pittera J, Conan M, Ratin M, Corre E, Le Corguillé G, Brillet-Guéguen L, Hoebeke M, Six C, Steglich C, Siegel A, Eveillard D, Partensky F and Garczarek L. (2020). Synergic effects of temperature and irradiance on the physiology of the marine Synechococcus strain WH7803. Frontiers in Microbiology section Aquatic Microbiology 11:1707, https://doi.org/10.3389/fmicb.2020.01707. 
  • Caputi, L., [..], Garczarek L., d'Ortenzio F., Testor P., Not F., Ribera d'Alcalà, M., Wincker P., Bowler C., Iudicone D. (2019) Community-level response to natural perturbations in open ocean planktonic ecosystems. Global Biogeochemical Cycles 33: 391-419. https://doi.org/10.1029/2018GB006022.
     

Book chapters

Monopartner

  • Partensky F., Hess W.R. & Garczarek L. (2022). Chapter 3. Marine cyanobacteria. In: The marine microbiome. Stal L.J. and Cretoiu M.S. (eds.). Springer International Publishing Switzerland. 2d edition. pp. 103-157. https://doi.org/10.1007/978-3-030-90383-1_3.
  • Lopez Dos Santos_A., Not F., Garczarek L., Ribeiro C., Guitierez A., Vaulot D. (2021). Use of metabarcoding in phytoplankton ecology in Advances in Phytoplankton Ecology: applications of emerging technologies, edit by Lesley Clementson, Ruth Eriksen and Anusuya Willis (CSIRO), https://www.elsevier.com/books/advances-in-phytoplankton-ecology/clementson/978-0-12-822861-6, Paperback ISBN: 9780128228616, eBook ISBN: 9780128230299.
  • Garczarek L. & Partensky F. (2019). « 40. Les apports de la méta-omique en écologie marine ». In D. Faure, D. Joly, S. Salamitou, 101 secrets de l’ADN, Paris : CNRS Éditions, ISBN: 9782271123237, pp.146-148.
     

Communications

Monopartner

  • Grébert T., Ratin M., Nguyen A.A., Pokhrel S., Kes Lynn J., Bo C., Haney A.M., Karty J.A., Schluchter W.M., Kehoe D.M., Garczarek L. & Partensky F. Functional exploration of genes involved in marine Synechococcus type IV-B chromatic acclimation by mutagenesis. ProSynFest Cordoue, Espagne. 16-19 mars 2022. Poster M.R.
  • Grébert T., Garczarek L., Humily F., Ratin M., Farrant G.K., Mary I, Mella-Flores D., Kehoe D.M., Labadie K., Wincker P., Daubin V. & Partensky F. (2022). Evolution and diversity of Synechococcus phycobilisomes. ProSynFest Cordoue, Espagne. 16-19 mars 2022. Présentation orale invitée FP.
  • Le Moal P, Boulart C, Garczarek L, Gac J.P, Bigeard E, Ferrieux M, Bonnet S and Guieu C. (2021). Potential role of marine picocyanobacteria in the distribution of dissolved methane in the Southwest Pacific Ocean. ASLO 2021 Aquatic Sciences Meeting. Visioconference June 22-27th 2021 (Communication orale CB).
  • Holtrop T, Huisman J, Stomp M, Aert J, Grébert T, Partensky F, Garczarek L& Jan van der Woerd H. (2021). Molecular vibrations of water predict spectral niches for photosynthesis in lakes and Oceans.  ASLO 2021 Aquatic Sciences Meeting. Visioconference, June 22-27th 2021 (Communication orale JH).
  • Breton S, J Jouhet, U Guyet, V Gros, J Pittera, D David, M Ratin, E Maréchal, F Partensky, H Doré, NA Nguyen, L Garczarek & C Six. (2018). Thermoregulation of membrane lipid composition in marine picocyanobacteria. International Society of Photosynthesis Research, Microbial Photosynthesis, 9-12 August 2018, Vancouver, Canada (poster).
  • Palacio A. S., Cabello A. M., Labban A. H., Morán X. A. G., Garczarek L., Alonso-Sáez L., López-Urrutia A. (2018). Testing the temperature-size rule in Prochlorococcus MIT9301 and Synechococcus RS9907: Differential responses of cell volume to increasing temperature. ISME17 (17th International Symposium on Microbial Ecology), Leipzig, 12 - 17 August 2018 (Poster).
  • Grébert T., Doré H., Farrant G.K., Scanlan D.J., Kehoe D.M., the Tara Oceans Consortium, Partensky F. & Garczarek L. (2018). A global oceanic distribution map of Synechococcus pigment types reveals the major ecological role of chromatic acclimation. 16th International Symposium on Phototrophic Prokaryotes, 4-10 August 2018, Vancouver, Canada (poster & présentation orale FP).
  • Grébert T., Dufour L., Nguyen A.A., Pokhrel S., Joseph K.L., Chen B., Ratin M., Haney A.M., Trinidad J., Karty J.A., Garczarek L., Schluchter W.M., Kehoe D.M. & Partensky F. (2021). Functional characterization of the MpeQWYZ phycobilin lyase family provides key insights into color niche acclimation and adaptation in marine Synechococcus cyanobacteria. Cyanodays 2021. Téléconférence, 28 janvier 2021 (présentation orale LD)
  • Breton S, Jouhet J, Guyet U, Gros V, Pittera J, Demory D, Ratin M, Maréchal E, Partensky F, Doré H, Nguyen NA, Garczarek L & C Six. (2019). Unveiling membrane thermoregulation strategies in marine picocyanobacteria. Meeting of the French Photosynthesis Society. 9-10 May 2019, Gif-sur-Yvette, France (Communication orale CS).
  • Grébert T, Ratin M, Nguyen AA, Haney AM, Karty JA, Pokhrel S, Chen B, Schluchter WM, Kehoe DM, Garczarek L and Partensky F. (2019). Use of mutagenesis to characterize genes involved in a widespread chromatic acclimation process in marine Synechococcus cyanobacteria. 5e colloque de Génomique Environnementale, La Rochelle, 8-10 Octobre 2019 (Poster MR).
  • Breton S, Jouhet J, Guyet U, Gros V, Pittera J, Demory D, Ratin M, Maréchal E, Partensky F, Doré H, Nguyen NA, Garczarek L & C Six. C. (2018). Lipids in the ocean. Structure, function, ecological role and applications, 20-22 November 2018, Brest, France (poster).
     

Multipartners

  • Garczarek L, Guyet U.,Doré H., Farrant G.K., Hoebeke M., Brillet-Guéguen L., Bisch A., Ferrieux M., Siltanen J., Corre E., Le Corguillé G., Ratin M., Pitt F.D, Ostrowski M., Conan M., Siegel A.,  Labadie K., Aury J.-M., Wincker P., Scanlan D.J. & Partensky F. (2022). Cyanorak v2.1: a scalable information system dedicated to the visualization and expert curation of genomes from the Cyanobacteria Cluster 5 radiation. ProSynFest Cordoue, Espagne. 16-19 mars 2022 (workshop presentation).
  • Doré H., Farrant G.K., Guyet U., Grébert T., Ratin M., Bisch A., Brillet-Guéguen L., Hoebeke M., Corre E., Scanlan D.J., Partensky F. & Garczarek L. (2022). Comparative and ecological genomics of marine picocyanobacteria. ProSynFest Cordoue, Espagne. 16-19 mars 2022 (Présentation orale invitee L.G.)
  • Ferrieux M., Dufour L., Leconte J., Ratin M., Guyet U., Doré H., Guéneugues A., Siltanen J., Hoebeke M., Blain S., Partensky F. & Garczarek L. (2022). Functional exploration of genes involved in marine Synechococcus type IV-B chromatic acclimation by mutagenesis. ProSynFest Cordoue, Espagne. 16-19 mars 2022. Poster M.F.
  • Guyet, U, H. Doré, G.K. Farrant, F. Partensky, M. Ratin, M. Hoebeke, E. Corre, G. Le Corguillé, P. Wincker, D. J. Scanlan, the Tara Ocean consortium and L. Garczarek. (2018). Adaptative and acclimative strategies of Synechococcus unveiled by meta-genomic and meta-transcriptomic Tara data analysis, Gordon Research Seminar-Marine Microbes, Lucca (Barga), Italy, June 29th-July 1st 2018 (Poster).
  • Doré H., T. Grébert, U. Guyet, G.K. Farrant, M. Ferrieux, F. Partensky, M. Ratin, M. Hoebeke, E. Corre, G. Le Corguillé, D. Iudicone, P. Wincker, D. M. Kehoe, D. J. Scanlan, S. Acinas the Tara Oceans consortium, and L. Garczarek. (2018). Fundamental and Environmental Realized Niches of the Marine Picocyanobacteria Synechococcus. Gordon Research Conference-Marine Microbes, Lucca (Barga), Italy, July 1-6 2018 (Poster)
  • Guyet, U, H. Doré, G.K. Farrant, F. Partensky, M. Ratin, M. Hoebeke, E. Corre, G. Le Corguillé, P. Wincker, D. J. Scanlan, the Tara Ocean consortium and L. Garczarek (2018). Adaptative and acclimative strategies of Synechococcus unveiled by meta-genomic and meta-transcriptomic Tara data analysis, Gordon Research Conference-Marine Microbes, Lucca (Barga), Italy, July 1-6 2018 (Poster).
  • Ferrieux M., Guyet U., Doré H., Ratin M., Guéneuguès A., Chasselin L., Dufour L., Sciandra T., Monier G., Della-Negra O., Six C., Hoebeke M., Le Corguillé G., Corre E., Bouget F.-Y., Blain S., Partensky F. and Garczarek L. (2021). Rôle du fer et de la température dans la différentiation écotypique et la structure des communautés de la picocyanobactérie marine Synechococcus. Cyanodays 2021. Téléconférence, 28 janvier 2021 (Communication orale MF).
  • Doré H, Grébert T, Guyet U, Farrant GK, Ferrieux M, Partensky F, Ratin M, Hoebeke M, Corre C, Le Corguillé G, Iudicone D, Wincker P, Kehoe DM, Scanlan DJ, Acinas S, The Tara Oceans consortium, and Garczarek L. (2019). Fundamental and Environmental Realized Niches of the Marine Picocyanobacteria Synechococcus. 5e colloque de Génomique Environnementale, La Rochelle, 8-10 Octobre 2019 (Poster LG).
  • Guyet U, Doré H, Farrant GK, Haguait J, Ferrieux M, Ratin M, Hoebeke M, Brillet-Guéguen l, Core E, Le Corguillé G, Wincker P, Eveillard D, Acinas S, Scanlan DJ, Partensky F, the Tara Oceans consortium and Garczarek L. (2019). Adaptation and acclimation strategies of picocyanobacteria unveiled by comparative genomics and meta-omic data analysis Synechococcus. 5e colloque de Génomique Environnementale, La Rochelle, 8-10 Octobre 2019 (Oral presentation UG).
  • Ferrieux M, Guyet U, Doré H, Guéneuguès A, Ratin M, Chasselin L, Dufour L, Sciandra T, Monier G, Della-Negra O, Six C, Hoebeke M, Le Corguillé G, Corre E, Bouget F.-Y, Blain S, Partensky F and Garczarek L. (2019). Adaptation to iron limitation and temperature in the marine picocyanobacterium Synechococcus. 5e colloque de Génomique Environnementale, La Rochelle, 8-10 Octobre 2019 (Poster MF).
  • Guyet U, Doré H, Farrant GK, Haguait J, Hoebeke M, Wincker P, Eveillard D, Acinas S, Scanlan DJ, Partensky F, the Tara Oceans consortium and Garczarek L. (2019). Adaptation and acclimation strategies of picocyanobacteria unveiled by comparative genomics and meta-omic data analysis. GOBITMAP workshop, Nantes, 26-27 June 2019 (Oral presentation UG).
  • Doré H., Partensky F., Grébert T., Farrant G.K., Eveillard D., Ratin M., Scanlan D.J. and Garczarek L. (2018). Ecologie des cyanobactéries marines Synechococcus et Prochlorococcus : apport des données de métagénomique de Tara Oceans. Atelier Métagénomique, GIS BV, 13 Novembre 2018, Paris (Oral presentation HD).
     

Outreach

Popular science journal

Popular science workshop and videos

  • Milliet M. et ‘Les Petits Débrouillards Grand Ouest’, 2021, "ADN et plancton", 5 classes d’écoles bretonnes (CM1/2; 15h d’animation) et pendant des évènements à destination du grand public tels que la Fête maritime de Roscoff (juillet 2022 ; 12h d’animation).
  • Rondeau S., Ratin M., Partensky F., Garczarek L. and Guichoux M. 2021. Vidéo YouTube ‘Ces bactéries qui ont changé notre planète’ (4’13). 
  • Rondeau S., Ratin M., Partensky F., Garczarek L. and Guichoux M. 2021. Vidéo YouTube ‘Peut-on lire l’avenir dans le plancton ?’ (7’53).
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