Publications
Publications in international journals
• Pittera J., Jouhet J., Breton S., Garczarek L., Partensky F., Maréchal E., Nguyen N.A, Doré H., Ratin M. Pitt F.D., Scanlan D.J. and Six C. : 2017.
Thermoacclimation and genome adaptation of the membrane lipidome in marine Synechococcus. Environ. Microbiol. http://doi: 10.1111/1462-2920.13985
• Grébert T., Doré H., Partensky F., Farrant G.K., Boss E., Picheral M., Acinas S., Kehoe D.J. and Garczarek L. : 2018.
Light color acclimation: a key process in the global ocean distribution of Synechococcus cyanobacteria. PNAS 115(9): E2010-E2019.
• Perez-Sepulveda B., Pitt F., N’Guyen A.N., Ratin M., Garczarek L., Millard A., Scanlan D.J. : 2018
Relative stability of ploidy in a marine Synechococcus across various growth conditions. Env. Microbiol. Rep. http://doi:10.1111/1758-2229.12614.
• Pittera J., Partensky F. & Six C. : 2017
Adaptive thermostability of light-harvesting complexes in marine picocyanobacteria. ISME J, 11: 112-124. http://doi.org/10.1038/ismej.2016.102
• Xia X., Partensky F., Garczarek L., Suzuki K., Guo C., Cheung S.Y. & Liu H.: 2017
Phylogeography and pigment type diversity of Synechococcus cyanobacteria in surface waters of the northwestern Pacific Ocean. Environ. Microbiol.19: 142–158. http://doi.org/10.1111/1462-2920.13541
• Farrant G.K., Doré H., Cornejo-Castillo F.M., Partensky F., Ratin M., Ostrowski M., Pitt F.D., Wincker P., Scanlan D.J., Iudicone D., Acinas S.G. & Garczarek L. : 2016.
Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria. Proceedings of the National Academy of Sciences, 113: E3365-E3374. http://doi.org/10.1073/pnas.1524865113
• Hess W.R., Garczarek L., Pfreundt U. & Partensky F. : 2016.
Phototrophic Microorganisms: The Basis of the Marine Food Web. In: The Marine Microbiome: An Untapped Source of Biodiversity and Biotechnological Potential (Stal LJ, Cretoiu MS eds), pp. 57-97. Springer International Publishing: Cham. http://doi.org/10.1007/978-3-319-33000-6_3
• Paulsen M.L., Bratbak G., Doré H., Garczarek L., Seuthe L., Müller O., Sandaa R.H., Larsen A. : 2016
Synechococcus in the Atlantic gateway to the Arctic Ocean. Frontiers in Marine Science http://doi.org/10.3389/fmars.2016.00191.
• Farrant, GK, Hoebeke, M., Partensky, F., Andres, G. and Garczarek, L. (2015)
WiseScaffolder: an algorithm for the semi-automatic scaffolding of Next Generation Sequencing data. En revision pour BMC Bioinformatics.
• Villar E., Farrant G.K., Follows M., Garczarek L., et al. (2015).
Environmental characteristics of Agulhas rings affect interocean plankton transport. Science 348: 6237 p1261447-1
• Guidi L., Chaffron S., Bittner L., Eveillard D. et al. (2015),
Plankton networks driving carbon export in the global ocean. En revision pour Nature.
• Pittera, J., Humily, F., Thorel, M., Grulois, D., Garzcarek, L. & Six, C. 2014.
Connecting thermal physiology and latitudinal niche partitioning in marine Synechococcus. ISME Journal 1–16.
Communication in international congresseS
• Eveillard D., Larhlimi A.
General Analysis of ecological networks. TARA Oceans meeting, Paris, 2014.
• Garczarek L., Farrant G.K., Doré H., Pitt F., Six C., Ratin M., Labadie K., Aury J.M., Wincker P., Scanlan D.J., Acinas S., Partensky F. and the TARA consortium.
Combination of comparative genomics, metagenomics and physiology for understanding niche adaptation in marine cyanobacteria. Genomics of prokaryotes, handling the data analysis bottleneck. Glimpses at Pan-Genomes, Nov 4-7 2014, Valencia, (présentation orale invitée LG)
• Garczarek L., Humily F., Farrant G.K., Doré H., Six C., Shukla A., Ratin M., Marie D., Kehoe D.M. and Partensky F.,
Light adaptation in marine cyanobacteria. 9th European Workshop on the Molecular Biology of Cyanobacteria, 7-11 Sept 2014, Texel Island, The Netherlands (présentation orale invitée LG)
• Garczarek L., Humily F., Farrant G.K., Doré H., Six C., Shukla A., Ratin M., Marie D., Kehoe D.M. and Partensky F.,
Toward solving the mystery of 'chameleon' cyanobacteria, TEASER BGE, 27-28 May 2014, Lyon, France (présentation orale LG)
• Partensky F, Humily F, Six C, Farrant GK, Shukla A, Ratin A, Doré H, Kehoe DM and Garczarek L.
Genomic and physiological characterization of chromatic acclimation in marine Synechococcus. International Symposium on Evolution, Biogenesis and Dynamics of Energy Transducing Membranes, 9-12 avril 2014, Paris (poster)
• Pittera J & Six C,
Thermostability of photosynthetic complexes among marine Synechococcus thermotypes. The 9th European Workshop on the Molecular Biology of Cyanobacteria, Texel Island from 7-11 September 2014, Netherland (Poster).
• Farrant G.K., Partensky F., Hoebeke M., Scanlan D.J., Labadie K., Aury J.M., Wincker P. The TARA Consortium and Laurence Garczarek.
Comparative genomics of marine Synechococcus and use as references for metagenomic analyses of the TARA Oceans data set TEASER BGE, 27-28 May 2014, Lyon, France (poster)
• Farrant G.K., Partensky F., Doré H., Humily F., Bisch A., Ratin M., Hoebeke M., LeCorguillé G., Corre E., Six C., Le Gall F., Pitt F., Scanlan D.J., Garczarek L.
New insights into the genomic structure of marine Synechococcus cyanobacteria through comparative genomics. MaCumBA meeting Reykjavik, Island, Sept 21-25 2015 (présentation orale invitée LG).
• Farrant G.K., Doré H., Partensky F., Cornejo-Castillo F.M., Pitt F., Humily F., Bisch A., Guéguen L., Hoebeke M., Ratin M., Six C., Le Corguillé G., Corre E., Mazard S., Ostrowski M., Scanlan D., Acinas S., Garczarek L. and the TARA-Oceans consortium.
Ecological genomics of marine picocyanobacteria. Gordon conference “Marine Molecular Ecology: Linking Molecular Mechanisms with Ecological Outcomes”. Honk Kong, China, August 2-7 2015 (présentation orale invitée LG).
• Farrant G.K., Doré H., Cornejo-Castillo F.M., Partensky F., Ratin M., Scanlan D.J., Acinas S., Garczarek L., and the TARA consortium.
Novel insight into the global distribution pattern of marine picocyanobacteria ecotypes and their realized niche at high taxonomical resolution based on TARA-Oceans dataset. MaCumBA meeting Reykjavik, Island, Sept 21-25 2015 (présentation orale GF).
• Guidi L., Chaffron S., Bittner L., Eveillard D., Tara coordinators, Raes J., Karsenti E., Bowler C., Gorsky G.
Plankton and gene networks associated to carbon export. ASLO Ocean Sciences Meeting, Granada, 2015
• Guidi L., Chaffron S., Bittner L., Eveillard D., Tara coordinators, Raes J., Karsenti E., Bowler C., Gorsky G. 2005
Revealing and analyzing networks of marine microbial ecosystems. Conférence Jacques Monod Marine Eco-Systems Biology, Roscoff, 2015
• Pitt F., Moniz M., Farrant G.K., Doré H., Ostrowski M., Mazard S., Garczarek L. and Scanlan D.J.
A targeted ‘omics strategy - providing new insights into the lifestyle and habitat of marine Synechococcus along the Atlantic Basin. MaCumBA meeting Reykjavik, Island, Sept 21-25 2015 présentation orale FP).
• Pittera J, Partensky F, Garczarek L & C Six. Thermostability of phycobilisomes among marine Synechococcus thermotypes. London, UK, 6th European Phycological Congress (présentation orale).
• Pittera J, Partensky F, Garczarek L & C Six.
Thermostability of phycobilisomes among marine Synechococcus thermotypes. 15th International Symposium on Phototrophic Prokaryotes, August 5th 2015, Tübingen, Germany (présentation orale).
• Sanfilipo J., Shukla A., Biswas A., Nguyen A.A., SchluchterW.M., Karty J.A., Partensky F., Blot N., Garczarek L, Hammad L.A., Strnat J., Gutu A., Kehoe D.M.
Mechanism and Regulation of Blue-Green Chromatic Acclimation in Marine Synechococcus. 15th International Symposium on Phototrophic Prokaryotes (ISPP), August 2-6, 2015, Tübingen.
• Doré H, Farrant GK, Sciandra T, Cornejo-Castillo FM, Partensky F, Ratin M, Scanlan DJ, Iudicone D, Acinas SG, the Tara Oceans consortium, and Garczarek L.
New insights into the ecology of marine picocyanobacteria. Gordon Research Seminar Marine Microbes, Gérone (Espagne) 18-19 Juin 2016 (présentation orale invitée HD).
• Doré H, Farrant GK, Sciandra T, Cornejo-Castillo FM, Partensky F, Ratin M, Scanlan DJ, Iudicone D, Acinas SG, the Tara Oceans consortium and Garczarek L.
Biogeography of marine picocyanobacteria reveals interactions with both their picocyanobacterial pairs and abiotic factors. Gordon Research Conference Marine Microbes. Gérone, Spain, June 19-23 2016 (poster).
• Doré H, Farrant GK, Grébert T., Cornejo-Castillo FM, Humily F, Ratin M, Bisch A, Pitt FD, Ostrowski M, Scanlan DJ, Acinas DG, Partensky F, the Tara Oceans Consortium and Garczarek L.
Genetic diversity and niche adaptation in marine picocyanobacteria: a genomic and metagenomic perspective. 33rd SIL Congress, Torino, Italy, 31 Juil-5 Aout 2016 (Keynote Lecture LG)
• Doré H., Gregory K. Farrant, Frédéric Partensky, Florian Humily, Morgane Ratin, Antoine Bisch, Loraine Guéguen, Mark Hoebeke, Erwan Corre, Gildas Le Corguillé, David J. Scanlan and Laurence Garczarek.
Genomic bases of long-term adaptation to environmental conditions in Prochlorococcus and Synechococcus. Annual Conference of the Microbiology Society 2017, Edinburgh April 3-6th 2017 (presentation orale HD).
• Grébert T, Doré H, Farrant GK, Partensky F, Garczarek L, Tara Ocean Consortium.
Global distribution and ecology of photosynthetic pigment types of the marine Synechococcus picocyanobacteria. Annual Conference of the Microbiology Society 2017, Edinburgh April 3-6th 2017 (poster).
• Breton S, Jouhet J, Pittera J, Doré H, Garczarek L, Ratin M, Nguyen NA, Partensky F, Maréchal E & C Six.
Thermoregulation of membrane lipid composition in picocyanobacteria: Towards an understanding of adaptation to thermal niches. 10th European Workshop on the Molecular Biology of Cyanobacteria, 20-24 August 2017, Cluj-Napoca, Romania (poster).
• Breton S, Jouhet J, Guyet U, Gros V, Pittera J, Demory D, Ratin M, Maréchal E, Partensky F, Doré H, Nguyen NA, Garczarek L & C Six.
Thermoregulation of membrane lipid composition in marine picocyanobacteria. Lipids in the ocean. Structure, function, ecological role and applications, 20-22 November 2018, Brest, France (poster).
• Breton S, J Jouhet, U Guyet, V Gros, J Pittera, D David, M Ratin, E Maréchal, F Partensky, H Doré, NA Nguyen, L Garczarek & C Six.
Thermoregulation of membrane lipid composition in marine picocyanobacteria. International Society of Photosynthesis Research, Microbial Photosynthesis, 9-12 August 2018, Vancouver, Canada (poster).
• Grébert T., Doré H., Farrant G.K., Scanlan D.J., Kehoe D.M., the Tara Oceans Consortium, Partensky F. & Garczarek L.
A global oceanic distribution map of Synechococcus pigment types reveals the major ecological role of chromatic acclimation. 16th International Symposium on Phototrophic Prokaryotes, 4-10 August 2018, Vancouver, Canada (poster & présentation orale FP).
• Guyet, U, H. Doré, G.K. Farrant, F. Partensky, M. Ratin, M. Hoebeke, E. Corre, G. Le Corguillé, P. Wincker, D. J. Scanlan, the Tara Ocean consortium and L. Garczarek.
Adaptative and acclimative strategies of Synechococcus unveiled by meta-genomic and meta-transcriptomic Tara data analysis, Gordon Research Seminar-Marine Microbes, Lucca (Barga), Italy, June 29th-July 1st 2018 (poster).
• Doré H., T. Grébert, U. Guyet, G.K. Farrant, M. Ferrieux, F. Partensky, M. Ratin, M. Hoebeke, E. Corre, G. Le Corguillé, D. Iudicone, P. Wincker, D. M. Kehoe, D. J. Scanlan, S. Acinas the Tara Oceans consortium, and L. Garczarek.
Fundamental and Environmental Realized Niches of the Marine Picocyanobacteria Synechococcus. Gordon Research Conference-Marine Microbes, Lucca (Barga), Italy, July 1-6 2018 (poster)
• Guyet, U, H. Doré, G.K. Farrant, F. Partensky, M. Ratin, M. Hoebeke, E. Corre, G. Le Corguillé, P. Wincker, D. J. Scanlan, the Tara Ocean consortium and L. Garczarek.
Adaptative and acclimative strategies of Synechococcus unveiled by meta-genomic and meta-transcriptomic Tara data analysis, Gordon Research Conference-Marine Microbes, Lucca (Barga), Italy, July 1-6 2018 (poster).
ARTICLES FOR THE GENERAL PUBLIC
• 2014 Article dans les cahiers de prospectives en Génomique Environnementale de l'INEE: "Génomique comparative et métagénomique des picocyanobactéries marines"
• 2016 Article dans « El Mundo » : Las cianobacterias, el nuevo centinela del cambio climático
http://www.elmundo.es/ciencia/2016/06/01/574e9bbb22601d8f248b464f.html
• 2016 Article dans En direct des Labos (CNRS, INEE) : Phytoplancton marin : une microdiversité sous influence
• 2016 Article publié sur le site du CSIC (Spanish national research council) : Un nuevo mapa global de cianobacterias revela diferencias en la distribución de su biodiversidad. http://www.dicat.csic.es/dicat/es/noticias-2/noticias/547-un-nuevo-mapa-...
• 2017 Article dans 101 secrets du vivant, L’ADN des écosystèmes, Titre du chapitre : Les apport de la méta-omique en écologie marine
• 2017 Article dans « L’Ocean à découvrir », CNRS Edition : La couleur de l’eau.
• 2018 Cartographie mondiale des « caméléons » du plancton : Article dans CNRS Hebdo (Édition du 15/02/201 ;
http://www.cnrs.fr/CNRS-Hebdo/bretagne-paysdeloire/lettre.php?numero=495...), La gazette du laboratoire (https://www.gazettelabo.fr/breves/breves.php?id=7210), En direct des laboratoires (http://www.cnrs.fr/inee/communication/breves/b340.html)
• 2018 Les "caméléons" du plancton règnent sur les océans, Article dans Sciences et Avenir du 14 février 2018 (https://www.sciencesetavenir.fr/nature-environnement/mers-et-oceans/les-...), lesnouveautés.fr (http://lesnouveautes.fr/nouvelles/les-cameleons-du-plancton-regnent-sur-...), Yahoo.com (https://fr.news.yahoo.com/cam%C3%A9l%C3%A9ons-plancton-r%C3%A8gnent-oc%C...), lesinfos.ma (https://www.lesinfos.ma/article/677175-Les-cameleons-du-plancton-regnent-sur-les-oceans.html)
