Publications
Metagenome-scale metabolic modelling for the characterization of cross-feeding interactions in freshwater cyanobacteria-associated microbial communities
Juliette Audemard, Nicolas Creusot, Julie Leloup, Charlotte Duval, Sébastien Halary, et al.. Metagenome-scale metabolic modelling for the characterization of cross-feeding interactions in freshwater cyanobacteria-associated microbial communities. JOBIM 2025 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2025, Bordeaux, France. ⟨hal-05281552⟩
A novel taxonomic database for eukaryotic mitochondrial cytochrome oxidase subunit I gene (eKOI), with a focus on protists diversity
Rubén González-Miguéns, Àlex Gàlvez-Morante, Margarita Skamnelou, Meritxell Antó, Elena Casacuberta, et al.. A novel taxonomic database for eukaryotic mitochondrial cytochrome oxidase subunit I gene (eKOI), with a focus on protists diversity. Database - The journal of Biological Databases and Curation, 2025, 2025, ⟨10.1093/database/baaf057⟩. ⟨hal-05286436⟩
The community of marine alveolate parasites in the Atlantic inflow to the Arctic Ocean is structured by season, depth, and water mass
Elianne Egge, Daniel Vaulot, Aud Larsen, Bente Edvardsen. The community of marine alveolate parasites in the Atlantic inflow to the Arctic Ocean is structured by season, depth, and water mass. Arctic Science, 2025, 11, pp.1-16. ⟨10.1139/as-2024-0016⟩. ⟨hal-05286536⟩
Muscle Spatial Transcriptomic Reveals Heterogeneous Profiles in Juvenile Dermatomyositis and Persistence of Abnormal Signature After Remission
Margot Tragin, Séverine A Degrelle, Baptiste Periou, Brigitte Bader-Meunier, Christine Barnerias, et al.. Muscle Spatial Transcriptomic Reveals Heterogeneous Profiles in Juvenile Dermatomyositis and Persistence of Abnormal Signature After Remission. Cells, 2025, 14 (12), pp.939. ⟨10.3390/cells14120939⟩. ⟨hal-05296051⟩
Snapshots of Coral Reef Biodiversity
Félix Pellerin, Diane Espel, Jane Ballard, Jessica Salaün, Ehsan Kayal, et al.. Snapshots of Coral Reef Biodiversity. The Future of Coral Reefs, 21, Springer Nature Switzerland, pp.187-241, 2025, Coral Reefs of the World, ⟨10.1007/978-3-031-98584-3_10⟩. ⟨hal-05302734⟩
Morphological traits and machine learning for genetic lineage prediction of two reef-building corals
Guinther Mitushasi, Yuko Kitano, Nicolas Oury, Hélène Magalon, David Paz-García, et al.. Morphological traits and machine learning for genetic lineage prediction of two reef-building corals. PLoS ONE, 2025, 20 (6), pp.e0326095. ⟨10.1371/journal.pone.0326095⟩. ⟨hal-05304150⟩
Structural and evolutionary features of red algal UV sex chromosomes
Agnieszka Lipinska, Guillaume Cossard, Paul Epperlein, Tobias Woertwein, Cecile Molinier, et al.. Structural and evolutionary features of red algal UV sex chromosomes. Genome Biology, 2025, 26 (1), pp.341. ⟨10.1186/s13059-025-03797-y⟩. ⟨hal-05303918⟩
Evolutionary history and association with seaweeds shape the genomes and metabolisms of marine bacteria
Catherine A. Pfister, Johanna Berlinghof, Maximiliana Bogan, Ulisse Cardini, Angelique Gobet, et al.. Evolutionary history and association with seaweeds shape the genomes and metabolisms of marine bacteria. MSphere, 2025, 10 (6), pp.e00996--24. ⟨10.1128/msphere.00996-24⟩. ⟨hal-05195842⟩
Diving deep into kelp forest food webs using dietary DNA metabarcoding
Bonnie Bailet, Jean-Charles Leclerc, Thibaut de Bettignies, Pascal Provost, Martial Laurans, et al.. Diving deep into kelp forest food webs using dietary DNA metabarcoding. AquaEcomics 2025: Exploring Aquatic Ecology through Omics, INRAE CAARTEL; Université Savoie Mont-Blanc, Mar 2025, Evian-Les-Bains, France. ⟨hal-05311887⟩
Meiofauna investigation and taxonomic identification through imaging—a game of compromise
Valentin Foulon, Abdesslam Benzinou, Kamal Nasreddine, Abdul Qayyum, Edwin Daché, et al.. Meiofauna investigation and taxonomic identification through imaging—a game of compromise. Limnology and Oceanography: Methods, 2025, 23 (7), pp.482-499. ⟨10.1002/lom3.10690⟩. ⟨hal-05315714⟩
Filling the gaps between scales to understand biomass properties
P. Assemat, Cecile Barron, Mirjam Czjzek, Paul Duru, Fabienne Guillon, et al.. Filling the gaps between scales to understand biomass properties. International Conference on Plant Cell Wall Biology, Jul 2025, Vancouver, Canada. 2025. ⟨hal-05323775⟩
De novo transcriptome of the red alga Gracilariopsis tenuifrons (Gracilariales, Rhodophyta) in response to prolonged temperature stress
André Faria, Olivier Godfroy, J. Mark Cock, Estela Plastino. De novo transcriptome of the red alga Gracilariopsis tenuifrons (Gracilariales, Rhodophyta) in response to prolonged temperature stress. Journal of Phycology, 2025, ⟨10.1111/jpy.70067⟩. ⟨hal-05327848⟩