Publications
Omics to Study and Manage Aquatic Environments: A Snapshot From the A qua E c O mics Meeting (Evian‐les‐Bains, 2025)
Frédéric Rimet, Clarisse Lemonnier, Benjamin Alric, Pedro Beja, Lucie Bittner, et al.. Omics to Study and Manage Aquatic Environments: A Snapshot From the A qua E c O mics Meeting (Evian‐les‐Bains, 2025). Molecular Ecology, 2025, 34 (17), ⟨10.1111/mec.70041⟩. ⟨hal-05273477⟩
Identification of novel H2A histone variants across diverse clades of algae
Ellyn Rousselot, Zofia Nehr, Jean-Marc Aury, France Denoeud, J. Mark Cock, et al.. Identification of novel H2A histone variants across diverse clades of algae. Genome Biology, 2025, 26 (1), pp.299. ⟨10.1186/s13059-025-03656-w⟩. ⟨hal-05279477⟩
Metagenome-scale metabolic modelling for the characterization of cross-feeding interactions in freshwater cyanobacteria-associated microbial communities
Juliette Audemard, Nicolas Creusot, Julie Leloup, Charlotte Duval, Sébastien Halary, et al.. Metagenome-scale metabolic modelling for the characterization of cross-feeding interactions in freshwater cyanobacteria-associated microbial communities. JOBIM 2025 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2025, Bordeaux, France. ⟨hal-05281552⟩
A novel taxonomic database for eukaryotic mitochondrial cytochrome oxidase subunit I gene (eKOI), with a focus on protists diversity
Rubén González-Miguéns, Àlex Gàlvez-Morante, Margarita Skamnelou, Meritxell Antó, Elena Casacuberta, et al.. A novel taxonomic database for eukaryotic mitochondrial cytochrome oxidase subunit I gene (eKOI), with a focus on protists diversity. Database - The journal of Biological Databases and Curation, 2025, 2025, ⟨10.1093/database/baaf057⟩. ⟨hal-05286436⟩
The community of marine alveolate parasites in the Atlantic inflow to the Arctic Ocean is structured by season, depth, and water mass
Elianne Egge, Daniel Vaulot, Aud Larsen, Bente Edvardsen. The community of marine alveolate parasites in the Atlantic inflow to the Arctic Ocean is structured by season, depth, and water mass. Arctic Science, 2025, 11, pp.1-16. ⟨10.1139/as-2024-0016⟩. ⟨hal-05286536⟩
Genome-resolved biogeography of Phaeocystales, cosmopolitan bloom-forming algae
Zoltán Füssy, Robert Lampe, Kevin Arrigo, Kerrie Barry, Margaret Brisbin, et al.. Genome-resolved biogeography of Phaeocystales, cosmopolitan bloom-forming algae. Nature Communications, 2025, 16 (1), pp.8559. ⟨10.1038/s41467-025-63565-1⟩. ⟨hal-05292826⟩
Muscle Spatial Transcriptomic Reveals Heterogeneous Profiles in Juvenile Dermatomyositis and Persistence of Abnormal Signature After Remission
Margot Tragin, Séverine A Degrelle, Baptiste Periou, Brigitte Bader-Meunier, Christine Barnerias, et al.. Muscle Spatial Transcriptomic Reveals Heterogeneous Profiles in Juvenile Dermatomyositis and Persistence of Abnormal Signature After Remission. Cells, 2025, 14 (12), pp.939. ⟨10.3390/cells14120939⟩. ⟨hal-05296051⟩
Snapshots of Coral Reef Biodiversity
Félix Pellerin, Diane Espel, Jane Ballard, Jessica Salaün, Ehsan Kayal, et al.. Snapshots of Coral Reef Biodiversity. The Future of Coral Reefs, 21, Springer Nature Switzerland, pp.187-241, 2025, Coral Reefs of the World, ⟨10.1007/978-3-031-98584-3_10⟩. ⟨hal-05302734⟩
Morphological traits and machine learning for genetic lineage prediction of two reef-building corals
Guinther Mitushasi, Yuko Kitano, Nicolas Oury, Hélène Magalon, David Paz-García, et al.. Morphological traits and machine learning for genetic lineage prediction of two reef-building corals. PLoS ONE, 2025, 20 (6), pp.e0326095. ⟨10.1371/journal.pone.0326095⟩. ⟨hal-05304150⟩
Structural and evolutionary features of red algal UV sex chromosomes
Agnieszka Lipinska, Guillaume Cossard, Paul Epperlein, Tobias Woertwein, Cecile Molinier, et al.. Structural and evolutionary features of red algal UV sex chromosomes. Genome Biology, 2025, 26 (1), pp.341. ⟨10.1186/s13059-025-03797-y⟩. ⟨hal-05303918⟩
Evolutionary history and association with seaweeds shape the genomes and metabolisms of marine bacteria
Catherine A. Pfister, Johanna Berlinghof, Maximiliana Bogan, Ulisse Cardini, Angelique Gobet, et al.. Evolutionary history and association with seaweeds shape the genomes and metabolisms of marine bacteria. MSphere, 2025, 10 (6), pp.e00996--24. ⟨10.1128/msphere.00996-24⟩. ⟨hal-05195842⟩
Diving deep into kelp forest food webs using dietary DNA metabarcoding
Bonnie Bailet, Jean-Charles Leclerc, Thibaut de Bettignies, Pascal Provost, Martial Laurans, et al.. Diving deep into kelp forest food webs using dietary DNA metabarcoding. AquaEcomics 2025: Exploring Aquatic Ecology through Omics, INRAE CAARTEL; Université Savoie Mont-Blanc, Mar 2025, Evian-Les-Bains, France. ⟨hal-05311887⟩