Publications
Retrieval-Augmented Generation (RAG) over Genomic Reports in the ABRomics Platform: Towards AI-Assisted Antimicrobial Resistance Research
Thomas Mignon, Raphaël Tackx, Julie Lao, Amanda Dieuaide, Brieuc Quemeneur, et al.. Retrieval-Augmented Generation (RAG) over Genomic Reports in the ABRomics Platform: Towards AI-Assisted Antimicrobial Resistance Research. JOBIM 2026 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2026, Strasbourg, France. ⟨hal-05649796⟩
Integrating metagenome-scale metabolic modelling and metabolomics to identify molecular interactions in Microcystis phycospheres
Juliette Audemard, Nicolas Creusot, Julie Leloup, Sébastien Halary, Charlotte Duval, et al.. Integrating metagenome-scale metabolic modelling and metabolomics to identify molecular interactions in Microcystis phycospheres. RFMF 2026 - 18èmes journées scientifiques du RFMF, Réseau Francophone de Métabolomique et Fluxomique, May 2026, Lille, France. ⟨hal-05653596⟩
Red Blood Cell Piezo1 Activation Drives Faster Coagulation and Structural Alterations in Blood Clots through Red Blood Cell Deformability Impairment
Bita Asghariastanehei, Marie Martin, Elie Nader, Hamdi Rezigue, Anaëlle De Wreede, et al.. Red Blood Cell Piezo1 Activation Drives Faster Coagulation and Structural Alterations in Blood Clots through Red Blood Cell Deformability Impairment. Seminars in Thrombosis and Hemostasis, 2026, ⟨10.1055/a-2846-3643⟩. ⟨hal-05655126⟩
Galaxy for accessible, reproducible, and collaborative data analyses: 2026 update
Enis Afgan, Najat Amoukou, Rafael Andrade Buono, Mihail Anton, Christophe Antoniewski, et al.. Galaxy for accessible, reproducible, and collaborative data analyses: 2026 update. Nucleic Acids Research, In press, 54, pp.W105-W116. ⟨10.1093/nar/gkag469⟩. ⟨hal-05657044⟩
Proteomic insights into the effects of shipping noise on blue mussel early development
Stéphane Beauclercq, Delphine Veillard, Benoît Bernay, Arnaud Tanguy, Isabelle Marcotte, et al.. Proteomic insights into the effects of shipping noise on blue mussel early development. Journal of Proteomics, 2026, 329, pp.105664. ⟨10.1016/j.jprot.2026.105664⟩. ⟨hal-05616939⟩
eDNAqua-Plan Fact Sheet: Recommendations for a federated system of taxonomically curated reference libraries
Emilie Boulanger, Peter Woollard, Filipe Costa, Ian Probert, Frédéric Rimet. eDNAqua-Plan Fact Sheet: Recommendations for a federated system of taxonomically curated reference libraries. eDNAquaPlan Horizon Europe Project. 2026. ⟨hal-05668669⟩
eDNAqua-Plan Deliverable 9: Recommendations for a federated system of taxonomically curated reference libraries
Frédéric Rimet, Filipe Costa, Peter Woollard, Ian Probert, Emilie Boulanger. eDNAqua-Plan Deliverable 9: Recommendations for a federated system of taxonomically curated reference libraries. eDNAquaPlan Horizon Europe Project. 2026. ⟨hal-05668671⟩
Policy Briefing: from access to use—untangling the international legal frameworks that govern microbial resources
Davide Faggionato, Melania Muñoz-García, Tanja Kostic, Mariana L Ferrari, Pascale Vonaesch, et al.. Policy Briefing: from access to use—untangling the international legal frameworks that govern microbial resources. Sustainable Microbiology, 2026, 3 (1), pp.qvag005. ⟨10.1093/sumbio/qvag005⟩. ⟨pasteur-05668730⟩
Policy in Practice: How to do the Nagoya Protocol: common misconceptions, challenges and best practices for access and benefit-sharing compliance
Davide Faggionato, Melania Muñoz-García, Tanja Kostic, Mariana L Ferrari, Pascale Vonaesch, et al.. Policy in Practice: How to do the Nagoya Protocol: common misconceptions, challenges and best practices for access and benefit-sharing compliance. Sustainable Microbiology, 2026, 3 (2), pp.qvag007. ⟨10.1093/sumbio/qvag007⟩. ⟨hal-05668729⟩
Global patterns and regional insights into kelp forest protection, restoration, and stewardship
Aaron Eger, Adriana Vergés, Akshata Mehta, Albert Pessarrodona, Alejandra Mora-Soto, et al.. Global patterns and regional insights into kelp forest protection, restoration, and stewardship. Journal of Applied Phycology, 2026, ⟨10.1007/s10811-026-03917-6⟩. ⟨hal-05669906⟩
ATLASea BYTE-Sea: Navigating IT Systems and Web Portals for Sample Tracking and Marine Data Exploitation
Loraine Brillet-Guéguen, Lucile Jeusset, Victor Leguet, Wael Ben Ammar, Alexandre Nicaise, et al.. ATLASea BYTE-Sea: Navigating IT Systems and Web Portals for Sample Tracking and Marine Data Exploitation. JOBIM 2026 Strasbourg, Jun 2026, Strasbourg, France. ⟨hal-05671043⟩
BYTE-Sea: Advances in the development of the digital infrastructure for ATLASea, the French marine genome sequencing programme
Annie Lebreton, Loraine Brillet-Guéguen, Mark Hoebeke, Alexandre Nicaise, Alexandra Louis, et al.. BYTE-Sea: Advances in the development of the digital infrastructure for ATLASea, the French marine genome sequencing programme. JOBIM2026 Strasbourg, Jun 2026, Strasbourg, France. ⟨hal-05671112⟩