Publications

MiCoReCa (Microbiome Community Resource Catalogue) - Towards Centralized Curation And Integration Of Microbiome Bioinformatics Resources

Vivek Ashokan, Clara Emery, Agnès Barnabé, Valentin Loux, Christina Pavloudi, et al.. MiCoReCa (Microbiome Community Resource Catalogue) - Towards Centralized Curation And Integration Of Microbiome Bioinformatics Resources. 2026. ⟨hal-05443844⟩

Phytoplankton With Flexible Pigment Content Disadvantaged by Projected Future Decrease in Variability of the Ocean Light Spectrum

Francesco Mattei, Anna E Hickman, Julia Uitz, Vincenzo Vellucci, Laurence Garczarek, et al.. Phytoplankton With Flexible Pigment Content Disadvantaged by Projected Future Decrease in Variability of the Ocean Light Spectrum. Global Change Biology, 2026, 32 (1), pp.e70671. ⟨10.1111/gcb.70671⟩. ⟨hal-05451893⟩

Estimating the reduction in genetic diversity from background selection under non-equilibrium demography and partial selfing

Alexander Mackintosh, Maxence Brault, Denis Roze, Martin Lascoux, Sylvain Glémin. Estimating the reduction in genetic diversity from background selection under non-equilibrium demography and partial selfing. Molecular Biology and Evolution, In press, ⟨10.1093/molbev/msag004⟩. ⟨hal-05456156⟩

Next release of the European Marine Omics Biodiversity Observation Network (EMO BON) shotgun metagenomic data from water and sediment samples (Release 2)

Ioulia Santi, Christina Pavloudi, Maria Abagnale, Iñigo Azua, Zuriñe Baña, et al.. Next release of the European Marine Omics Biodiversity Observation Network (EMO BON) shotgun metagenomic data from water and sediment samples (Release 2). Biodiversity Data Journal, 2026, 14, pp.e178484. ⟨10.3897/BDJ.14.e178484⟩. ⟨hal-05480555⟩

Prokaryotic microbiota outperform eukaryotic microbiota in differentiating between infection states of iconic diseases of two commercial oyster species

K. Mathias Wegner, Benjamin Morga, Laure Guillou, Martina Strittmatter, Cyrielle Lecadet, et al.. Prokaryotic microbiota outperform eukaryotic microbiota in differentiating between infection states of iconic diseases of two commercial oyster species. Aquaculture, 2025, 594, pp.741363. ⟨10.1016/j.aquaculture.2024.741363⟩. ⟨hal-04665295⟩

Exploration of the extracellular matrix of the red alga Chondrus crispus reveals unprecedented insights into carrageenan structures

David Ropartz, Adrien Lissarrague, Murielle Jam, Diane Jouanneau, Bastien Annic, et al.. Exploration of the extracellular matrix of the red alga Chondrus crispus reveals unprecedented insights into carrageenan structures. Carbohydrate Polymers, 2025, 348, pp.122737. ⟨10.1016/j.carbpol.2024.122737⟩. ⟨hal-04734206⟩

Fouling community shows high resistance and metabolic resilience towards experimental high intensity heatwave

Robin P.M. Gauff, Stephane Greff, Olivier Bohner, Stéphane Loisel, Christophe Lejeusne, et al.. Fouling community shows high resistance and metabolic resilience towards experimental high intensity heatwave. Marine Environmental Research, 2025, 203, pp.106813. ⟨10.1016/j.marenvres.2024.106813⟩. ⟨hal-04775806⟩

Establishing the ELIXIR Microbiome Community

Robert D Finn, Bachir Balech, Josephine Burgin, Physilia Chua, Erwan Corre, et al.. Establishing the ELIXIR Microbiome Community. F1000Research, 2025, 13, pp.50. ⟨10.12688/f1000research.144515.2⟩. ⟨hal-04796156⟩

Phytostabilisation d'un site minier : étude de faisabilité : application au site du bois vert

Souhir Soussou, Geoffroy Alexandre, Jean-Claude Cleyet-Marel, Valérie Guérin, Louis de Lary. Phytostabilisation d'un site minier : étude de faisabilité : application au site du bois vert. 5. Rencontres Nationales de la Recherche sur les sites et sols pollués, Feb 2025, Paris, France. ⟨hal-04854286⟩

Estimating consensus proteomes and metabolic functions from taxonomic affiliations

Arnaud Belcour, Pauline Hamon-Giraud, Alice Mataigne, Baptiste Ruiz, Yann Le Cunff, et al.. Estimating consensus proteomes and metabolic functions from taxonomic affiliations. 2025. ⟨hal-03697249v2⟩

Identification and Characterization of a New Thermophilic κ‑Carrageenan Sulfatase

Nanna Rhein-Knudsen, Diego S Reyes-Weiss, Leesa J Klau, Alexandra Jeudy, Thomas Roret, et al.. Identification and Characterization of a New Thermophilic κ‑Carrageenan Sulfatase. Journal of Agricultural and Food Chemistry, 2025, 73, pp.2044 - 2055. ⟨10.1021/acs.jafc.4c09751⟩. ⟨hal-04923334⟩

Sex chromosomes and chromosomal rearrangements are key to behavioural sexual isolation in Jaera albifrons marine isopods

Ambre Ribardiere, Claire Daguin-Thiebaut, Jerome Coudret, Gildas Le Corguille, Komlan Avia, et al.. Sex chromosomes and chromosomal rearrangements are key to behavioural sexual isolation in Jaera albifrons marine isopods. 2025. ⟨hal-04923366⟩