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Photo Gabriel Markov

Gabriel MARKOV

Chargé de recherche CNRS
Co-head of the ABIE team and scientific manager of the Metabomer platform
Unité(s) de recherche
Laboratoire de Biologie Intégrative des Modèles Marins
Equipe(s)
Team ABIE - Algal Biology and Interactions with the Environnement
Plateforme(s)
Plateforme de métabolomique - METABOMER

I investigate metabolic pathway evolution, integrating information about the evolution of single enzymes with the distribution of metabolites accross lineages. This led me to develop methods to tackle directly the evolution of pathways at that level of abstraction. I am strongly interested about eukaryotic metabolic pathways for which there is a significant amount of detailed biological knowledge, such as those producing signaling molecules.

Publications

Metagenome-scale metabolic modelling for the characterization of cross-feeding interactions in freshwater cyanobacteria-associated microbial communities

Juliette Audemard, Nicolas Creusot, Julie Leloup, Charlotte Duval, Sébastien Halary, et al.. Metagenome-scale metabolic modelling for the characterization of cross-feeding interactions in freshwater cyanobacteria-associated microbial communities. JOBIM 2025 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2025, Bordeaux, France. ⟨hal-05281552⟩

Methods for a species-specific genome-scale metabolic model designed for eukaryotes and applied to the Ascophyllum nodosum macroalga

Pauline Hamon-Giraud, Benoît Bergk Pinto, Jeanne Got, Coralie Rousseau, Erwan Corre, et al.. Methods for a species-specific genome-scale metabolic model designed for eukaryotes and applied to the Ascophyllum nodosum macroalga. JOBIM 2025 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2025, Bordeaux, France. pp.109-117. ⟨hal-05374724⟩

Empirical evidence for metabolic drift in plant and algal lipid biosynthesis pathways

Maëlle Zonnequin, Arnaud Belcour, Ludovic Delage, Anne Siegel, Samuel Blanquart, et al.. Empirical evidence for metabolic drift in plant and algal lipid biosynthesis pathways. Frontiers in Plant Science, 2024, 15, pp.1339132. ⟨10.3389/fpls.2024.1339132⟩. ⟨hal-04473577⟩

Metagenome-scale metabolic modelling for the characterization of cross-feeding interactions in Microcystis-associated microbial communities, in the context of freshwater cyanobacterial blooms

Juliette Audemard, Sébastien Halary, Gabriel Markov, Jeanne Got, Anne Siegel, et al.. Metagenome-scale metabolic modelling for the characterization of cross-feeding interactions in Microcystis-associated microbial communities, in the context of freshwater cyanobacterial blooms. JOBIM 2024 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2024, Toulouse, France. pp.1-1, 2024. ⟨hal-04654522⟩

Plant and algal lipidomes: Analysis, composition, and their societal significance

Juliette Jouhet, Eliana Alves, Yohann Boutté, Sylvain Darnet, Frédéric Domergue, et al.. Plant and algal lipidomes: Analysis, composition, and their societal significance. Progress in Lipid Research, 2024, 96, pp.101290. ⟨10.1016/j.plipres.2024.101290⟩. ⟨hal-04673335⟩

A review on the chemical ecology of the Fucaceae holobionts: from fundamental knowledge to applications

Coralie Rousseau, Gautier Demoulinger, Sylvie Rousvoal, Delphine Champeval, Maurane Dolly, et al.. A review on the chemical ecology of the Fucaceae holobionts: from fundamental knowledge to applications. Comptes Rendus. Chimie, 2024, 26 (S2), pp.1-25. ⟨10.5802/crchim.271⟩. ⟨hal-04740350⟩

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