Alan Le Moan

Alan LE MOAN

Chargé de recherche CNRS

I am a population geneticist interested in a broad range of questions in evolutionary biology, structured around three main research themes: speciation in intertidal environments, marine invasions, and urban evolution, as well as the connections between these fields. My work combines field-based observations and experiments with -omics sequencing approaches to investigate evolutionary processes.

Speciation in the intertidal zone: Understanding how gene flow is reduced and ultimately halted between species is a central goal of speciation research. I use the intertidal zone as a natural laboratory to investigate the evolutionary processes underlying speciation. My research focuses on local adaptation, the role of gene flow along the speciation continuum, the consequences of chromosomal rearrangements on the evolution of reproductive barriers, and the interplay between sex chromosome evolution and reproductive isolation. My current research primarily focuses on marine gastropods and brown algae. I am notably working hybrid zones between species exhibiting distinct reproductive strategies. Through these systems, I aim to understand both how reproductive traits evolve and how differences in these traits contribute to the formation and maintenance of reproductive barriers.

(photo credit: Wilfried Thomas)

Marine invasions: I am also interested in marine biological invasions. Marine invasive species encompass a wide range of invasion histories, providing excellent opportunities to study the evolutionary consequences of these extreme demographic events on genetic diversity. Using population genomic approaches, I investigate how invasion events affect genetic diversity and genomic indicators of fitness, such as genetic load, and how these genetic outcomes of introductions, in turn, influence invasion dynamics. I am currently developing projects on these questions using Sargassum muticum and Undaria pinnatifida as model systems.

Urban evolution along the seashore: Marine coastal habitats are profoundly impacted by human activities. Jetties and breakwaters alter wave exposure regimes along the shoreline, while harbours concentrate pollutants derived from human waste. Maritime transport and aquaculture practices also directly affect the dispersal and migration patterns of organisms, thereby influencing gene flow between distant populations. In my research, I investigate how multiple features associated with human activity and urban coastal development shape the evolutionary trajectories of species.

Publications

Le Moan, A., Stankowski, S., Rafajlović, M., Ortega-Martinez, O., Faria, R., Butlin, R. K., & Johannesson, K. (2024). Coupling of twelve putative chromosomal inversions maintains a strong barrier to gene flow between snail ecotypes. Evolution letters, 8(4), 575–586. doi :10.1093/evlett/qrae014
Le Moan, A., Panova, M., De Jode, A., Ortega-Martinez, O., Duvetorp, M., Faria, R., Butlin, R., & Johannesson, K. (2023). An allozyme polymorphism is associated with a large chromosomal inversion in the marine snail Littorina fabalis. Evolutionary Applications, 16(2), 279‑292. doi: 10.1111/eva.13427
Le Moan, A., Roby, C., Fraisse, C., Daguin-Thiébaut, C., Bierne, N., & Viard, F. (2021). An introgression breakthrough left by an anthropogenic contact between two ascidians. Molecular Ecology, 30(24), 6718‑6732. doi:10.1111/mec.16189
Le Moan, A., Bekkevold, D., & Hemmer-Hansen, J. (2021). Evolution at two time frames: Ancient structural variants involved in post-glacial divergence of the European plaice (Pleuronectes platessa). Heredity, 126(4). doi: 10.1038/s41437-020-00389-3
Le Moan, A., Gagnaire, P.-A., & Bonhomme, F. (2016). Parallel genetic divergence among coastal–marine ecotype pairs of European anchovy explained by differential introgression after secondary contact. Molecular Ecology, 25(13), 3187‑3202. doi: 10.1111/mec.13627


Inversions support both parallel and location-specific adaptations in snail ecotypes

Basile Pajot, Thomas Broquet, Le Qin Choo, Pierre Barry, Rui Faria, et al.. Inversions support both parallel and location-specific adaptations in snail ecotypes. BioRxiv, 2026, ⟨10.64898/2026.01.05.697708⟩. ⟨hal-05557912⟩

Chromosome-scale genome assembly and gene annotation of the hydrothermal vent annelid Alvinella pompejana yield insight into animal evolution in extreme environments

Sami El Hilali, Philippe Dru, Alan Le Moan, Yang I Li, Martijn A Huynen, et al.. Chromosome-scale genome assembly and gene annotation of the hydrothermal vent annelid Alvinella pompejana yield insight into animal evolution in extreme environments. BMC Biology, 2025, 23 (1), pp.274. ⟨10.1186/s12915-025-02369-7⟩. ⟨hal-05335717⟩

Genome divergence between European anchovy ecotypes fuelled by structural variants originating from trans-equatorial admixture

Laura Meyer, Pierre Barry, Alan Le Moan, Christine Arbiol, Rita Castilho, et al.. Genome divergence between European anchovy ecotypes fuelled by structural variants originating from trans-equatorial admixture. Proceedings of the Royal Society B: Biological Sciences, 2025, 292 (2058), ⟨10.1098/rspb.2025.1416⟩. ⟨hal-05348288⟩

Genealogical Analysis of Replicate Flower Colour Hybrid Zones in Antirrhinum

Arka Pal, Daria Shipilina, Alan Le Moan, Adrian Mcnairn, Jennifer Grenier, et al.. Genealogical Analysis of Replicate Flower Colour Hybrid Zones in Antirrhinum. Molecular Ecology, 2025, 34 (22), pp.e70067. ⟨10.1111/mec.70067⟩. ⟨hal-05273449⟩

Fine Scale Patterns of Population Structure and Connectivity in Scandinavian Flat Oysters in Scandinavia (Ostrea edulis L.)

Chloé Robert, Homère Alves Monteiro, Alan Le Moan, Arnaud Tanguy, Ane Laugen, et al.. Fine Scale Patterns of Population Structure and Connectivity in Scandinavian Flat Oysters in Scandinavia (Ostrea edulis L.). Evolutionary Applications, 2025, 18 (4), pp.e70096. ⟨10.1111/eva.70096⟩. ⟨hal-05055506⟩

An Evolutionary Mosaic Challenges Traditional Monitoring of a Foundation Species in a Coastal Environment—The Baltic Fucus vesiculosus

Ricardo Pereyra, Alexandra Kinnby, Alan Le Moan, Olga Ortega-Martinez, Per Jonsson, et al.. An Evolutionary Mosaic Challenges Traditional Monitoring of a Foundation Species in a Coastal Environment—The Baltic Fucus vesiculosus. Molecular Ecology, 2025, CONSERVATION GENOMICS ‐ MAKING A DIFFERENCE, 34 (23), pp.e17699. ⟨10.1111/mec.17699⟩. ⟨hal-04968495⟩