Created 26/02/2017 Updated 29/10/2018


  1. Jacquemot, L., Bettarel, Y., Monjol, J., Corre, E., Halary, S., Desnues, C., Bouvier, T. et al. 2018. Therapeutic Potential of a New Jumbo Phage That Infects Vibrio coralliilyticus, a Widespread Coral Pathogen. Front. Microbiol. 9:1–16.

  2. Tragin, M. & Vaulot, D. 2018. Novel diversity within marine Mamiellophyceae (Chlorophyta) unveiled by metabarcoding. bioRxiv.

  3. Farhat, S., Florent, I., Noel, B., Kayal, E., Da Silva, C., Bigeard, E., Alberti, A. et al. 2018. Comparative Time-Scale Gene Expression Analysis Highlights the Infection Processes of Two Amoebophrya Strains. Front. Microbiol. 9:1–19.

  4. Sandin, M.M., Pillet, L., Biard, T., Poirier, C., Bigeard, E., Romac, S., Suzuki, N. et al. 2018. Time calibrated morpho-molecular classification of Nassellaria (Radiolaria). bioRxiv. 1–32.

  5. Adl, S.M., Bass, D., Lane, C.E., Lukeš, J., Schoch, C.L., Smirnov, A., Agatha, S. et al. 2018. Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes. J. Eukaryot. Microbiol.

  6. Zhong, K.X., Suttle, C.A., Baudoux, A., Derelle, E., Colombet, J., Cho, A., Caleta, J. et al. 2018. A New Freshwater Cyanosiphovirus Harboring Integrase. Front. Microbiol. 9:1–15.

  7. del Campo, J., Kolisko, M., Boscaro, V., Santoferrara, L.F., Nenarokov, S., Massana, R., Guillou, L. et al. 2018. EukRef: Phylogenetic curation of ribosomal RNA to enhance understanding of eukaryotic diversity and distribution. PLOS Biol. 16:e2005849.

  8. Demory, D., Baudoux, A.-C., Monier, A., Simon, N., Six, C., Ge, P., Rigaut-Jalabert, F. et al. 2018. Picoeukaryotes of the Micromonas genus: sentinels of a warming ocean. ISME J.

  9. Clerissi, C., Brunet, S., Vidal-Dupiol, J., Adjeroud, M., Lepage, P., Guillou, L., Escoubas, J.-M. et al. 2018. Protists Within Corals: The Hidden Diversity. Front. Microbiol. 9:2043.

  10. Partensky, F. & Vaulot, D. 2018. Alain Sournia, phycologist and philosopher (1940-2018). Cah. Biol. Mar. 59:403–7.

  11. Meng, A., Marchet, C., Corre, E., Peterlongo, P., Alberti, A., Da Silva, C., Wincker, P. et al. 2018. A de novo approach to disentangle partner identity and function in holobiont systems. Microbiome. 6:105.

  12. Lambert, S., Tragin, M., Lozano, J.-C., Ghiglione, J.-F., Vaulot, D., Bouget, F.-Y. & Galand, P.E. 2018. Rhythmicity of coastal marine picoeukaryotes, bacteria and archaea despite irregular environmental perturbations. ISME J. in press.

  13. Meng, A., Corre, E., Probert, I., Gutierrez-Rodriguez, A., Siano, R., Annamale, A., Alberti, A. et al. 2018. Analysis of the genomic basis of functional diversity in dinoflagellates using a transcriptome-based sequence similarity network. Mol. Ecol. 0–2.

  14. Tragin, M. & Vaulot, D. 2018. Green microalgae in marine coastal waters: The Ocean Sampling Day (OSD) dataset. Sci. Rep. 8:14020.

  15. Siano, R., Chapelle, A., Antoine, V., Michel-Guillou, E., Rigaut-Jalabert, F., Guillou, L., Hégaret, H. et al. 2018. Citizen participation in monitoring phytoplankton seawater discolorations. Mar. Policy. in press.

  16. Gu, H., Li, X., Chomérat, N., Luo, Z., Sarno, D., Gourvil, P., Balzano, S. et al. 2018. Adenoides sinensis , a new sand-dwelling dinoflagellate species from China and reexamination of Adenoides eludens from an Atlantic strain. Phycologia. 57:179–90

  17. Tragin, M., Zingone, A. & Vaulot, D. 2018. Comparison of coastal phytoplankton composition estimated from the V4 and V9 regions of the 18S rRNA gene with a focus on photosynthetic groups and especially Chlorophyta. Environ. Microbiol. 20:506–20.

  18. Kuwata, A., Yamada, K., Ichinomiya, M., Yoshikawa, S., Tragin, M., Vaulot, D. & Lopes dos Santos, A. 2018. Bolidophyceae, a Sister Picoplanktonic Group of Diatoms – A Review. Front. Mar. Sci. 5:370.

  19. Gérikas Ribeiro, C., Lopes dos Santos, A., Marie, D., Pereira Brandini, F. & Vaulot, D. 2018. Small eukaryotic phytoplankton communities in tropical waters off Brazil are dominated by symbioses between Haptophyta and nitrogen-fixing cyanobacteria. ISME J. 12:1360–74.

  20. Stern, R., Kraberg, A., Bresnan, E., Kooistra, W.H.C.F., Lovejoy, C., Montresor, M., Morán, X.A.G. et al. 2018. Molecular analyses of protists in long-term observation programmes—current status and future perspectives. J. Plankton Res. in press.

  21. Carradec, Q., Pelletier, E., Da Silva, C., Alberti, A., Seeleuthner, Y., Blanc-Mathieu, R., Lima-Mendez, G. et al. 2018. A global ocean atlas of eukaryotic genes. Nat. Commun. 9:373.

  22. Siano, R., Chapelle, A., Antoine, V., Michel-Guillou, E., Rigaut-Jalabert, F., Guillou, L., Hégaret, H. et al. 2018. Citizen participation in monitoring phytoplankton seawater discolorations. Mar. Policy. in press.


  1. Selosse, M.-A., Charpin, M. & Not, F. 2017. Mixotrophy everywhere on land and in water: the grand écart hypothesis. Ecol. Lett. 20:246–63.

  2. Demory, D., Arsenieff, L., Simon, N., Six, C., Rigaut-jalabert, F., Marie, D., Ge, P. et al. 2017. Temperature is a key factor in Micromonas – virus interactions. ISME J. in press:1–12.

  3. Biard, T., Bigeard, E., Audic, S., Poulain, J., Gutierrez-Rodriguez, A., Pesant, S., Stemmann, L. et al. 2017. Biogeography and diversity of Collodaria (Radiolaria) in the global ocean. ISME J. 1–42.

  4. Ruiz, E., Baudoux, A., Nathalie, S., Sandaa, R. & Thingstad, T.F. 2017. Micromonas vs Virus : new experimental insights challenge viral impact. Environ. Microbiol. in press.

  5. Chust, G., Vogt, M., Benedetti, F., Nakov, T., Villéger, S., Aubert, A., Vallina, S.M. et al. 2017. Mare Incognitum: A Glimpse into Future Plankton Diversity and Ecology Research. Front. Mar. Sci. 4.

  6. Gutierrez-Rodriguez, A., Pillet, L., Biard, T., Said-Ahmad, W., Amrani, A., Simó, R. & Not, F. 2017. Dimethylated sulfur compounds in symbiotic protists: A potentially significant source for marine DMS(P). Limnol. Oceanogr.

  7. Botebol, H., Lelandais, G., Six, C., Lesuisse, E., Meng, A., Bittner, L., et al. (2017). Acclimation of a low iron adapted Ostreococcus strain to iron limitation through cell biomass lowering. Sci. Rep. 7, 327. doi:10.1038/s41598-017-00216-6.

  8. Alves-de-Souza, C., Benevides, T. S., Santos, J. B. O., Von Dassow, P., Guillou, L., and Menezes, M. (2017). Does environmental heterogeneity explain temporal β diversity of small eukaryotic phytoplankton? Example from a tropical eutrophic coastal lagoon. J. Plankton Res. in press, 1–17. doi:10.1093/plankt/fbx026.

  9. Simon, N., Foulon, E., Grulois, D., Six, C., Latimier, M., Desdevises, Y., et al. (2017). Revision of the genus Micromonas (Manton et Parke) (Chlorophyta, Mamiellophyceae), of the type species M. pusilla (Butcher) Manton & Parke and of the species M. commoda (van Baren, Bachy and Worden) and description of two new species. Protist in press. doi:10.1016/j.protis.2017.09.002.

  10. Lopes dos Santos, A., Pollina, T., Gourvil, P., Corre, E., Marie, D., Garrido, J. L., et al. (2017). Chloropicophyceae, a new class of picophytoplanktonic prasinophytes. Sci. Rep. 7, 14019. doi:10.1038/s41598-017-12412-5.
    Mocaër, P.-Y., and Baudoux, A. (2017). Les virus au service de l ’écologie marine. Virologie 21, 160–172. doi:10.1684/vir.2017.0704.

  11. Tragin, M., Zingone, A., and Vaulot, D. (2017). Comparison of coastal phytoplankton composition estimated from the V4 and V9 regions of 18S rRNA gene with a focus on photosynthetic groups and especially Chlorophyta. Environ. Microbiol. in press, 1–41. doi:10.1111/1462-2920.13952.

  12. Vecoli, M., Wellman, C. H., Gerrienne, P., Le Hérissé, A., and Steemans, P. (2017). Middle Ordovician cryptospores from the Saq-Hanadir transitional beds in the QSIM-801 well, Saudi Arabia. Rev. Micropaleontol., 1–30. doi:10.1016/j.revmic.2017.06.003.

  13. Leles, S. G., Mitra, A., Flynn, K. J., Stoecker, D. K., Hansen, P. J., Calbet, A., et al. (2017). Oceanic protists with different forms of acquired phototrophy display contrasting biogeographies and abundance. Proc. R. Soc. B Biol. Sci. 284, 20170664. doi:10.1098/rspb.2017.0664.

  14. Sauvadet, A.L., Lynn, D.H., Roussel, E.G., Le Panse, S., Bigeard, E., Schrével, J. & Guillou, L. 2017. Redescription and phylogenetic analyses of Durchoniella spp. (Ciliophora, Astomatida) associated with the polychaete Cirriformia tentaculata (Montagu, 1808). Eur. J. Protistol. 61:265–77.


  1. Biard, T., Stemmann, L., Picheral, M., Mayot, N., Vandromme, P., Hauss, H., Gorsky, G. et al. 2016. In situ imaging reveals the biomass of giant protists in the global ocean. Nature. 532:504–7.
  2. Campo, J. del, Guillou, L., Hehenberger, E., Logares, R., López-García, P. & Massana, R. 2016. Ecological and evolutionary significance of novel protist lineages. Eur. J. Protistol. in press.
  3. Edvardsen, B., Egge, E.S. & Vaulot, D. 2016. Diversity and distribution of haptophytes revealed by environmental sequencing and metabarcoding – a review. Perspect. Phycol. in press.
  4. Guidi, L., Chaffron, S., Bittner, L. & Eveillard, D. 2016. Plankton networks driving carbon export in the oligotrophic ocean. Nature. in press.
  5. Ichinomiya, M., Lopes dos Santos, A., Gourvil, P., Yoshikawa, S., Kamiya, M., Ohki, K., Audic, S. et al. 2016. Diversity and oceanic distribution of Parmales (Bolidophyceae), a picoplankton group closely related to diatoms. ISME J. in press.
  6. Klouch, K.Z., Schmidt, S., Andrieux-Loyer, F., Gac, M. Le, Hervio-Heath, D., Qui-Minet, Z.N., Quéré, J. et al. 2016. Historical records from dated sediment cores reveal the multidecadal dynamic of the toxic dinoflagellate Alexandrium minutum in the Bay of Brest (France). FEMS Microbiol. Ecol. in press.
  7. Lopes dos Santos, A., Gourvil, P., Rodriguez-Hernandez, F., Garrido, J.L. & Vaulot, D. 2016. Photosynthetic pigments of oceanic Chlorophyta belonging to prasinophytes clade VII. J. Phycol. 52:148–55.
  8. Mitra, A., Flynn, K.J., Tillmann, U., Raven, J.A., Caron, D., Stoecker, D.K., Not, F. et al. 2016. Defining Planktonic Protist Functional Groups on Mechanisms for Energy and Nutrient Acquisition; Incorporation of Diverse Mixotrophic Strategies. Protist. 167:106–20.
  9. Müller, D.G., Maier, I., Marie, D. & Westermeier, R. 2016. Nuclear DNA level and life cycle of kelps: Evidence for sex-specific polyteny in Macrocystis (Laminariales, Phaeophyceae). J. Phycol. n/a – n/a.
  10. Percopo, I., Ruggiero, M.V., Balzano, S., Gourvil, P., Lundhölm, N., Siano, R., Tammilehto, A. et al. 2016. P. arctica sp. nov., a new cold-water cryptic Pseudo-nitzschia species within the P. pseudodelicatissima complex. J. Phycol. in press.
  11. Tragin, M., Lopes dos Santos, A., Christen, R. & Vaulot, D. 2016. Phylogenetic diversity and ecology of green micro algae in marine systems. Perspect. Phycol. in press.
  12. Forster, D., Dunthorn, M., Mahé, F., Dolan, J.R., Audic, S., Bass, D., Bittner, L. et al. 2016. Benthic protists: the under-charted majority. FEMS Microbiol. Ecol. in press:fiw120.
  13. Schrével, J., Valigurová, A., Prensier, G., Chambouvet, A., Florent, I. & Guillou, L. 2016. Ultrastructure of Selenidium pendula, the Type Species of Archigregarines, and Phylogenetic Relations to Other Marine Apicomplexa. Protist. 167:339–68.
  14. Brussaard, C.P.D., Baudoux, A.-C. & Rodríguez-Valera, F. 2016. Marine Viruses. In Stal, L. J. & Cretoiu, S. M. [Eds.] The Marine Microbiome – an Untold Resource of Biodiversity and Biotechnological Potential. Springer, pp. 305–32.
  15. Not, F., Probert, I., Gerikas-Ribeiro, C., Crenn, K., Guillou, L., Jeanthon, C. & Vaulot, D. 2016. Photosymbiosis in marine pelagic environments. In Stal, L. J. & Cretoiu, S. M. [Eds.] The Marine Microbiome – an Untold Resource of Biodiversity and Biotechnological Potential. Springer, pp. 305–32.
  16. Balzano, S., Percopo, I., Siano, R., Gourvil, P., Chanoine, M., Marie, D., Vaulot, D. et al. 2016. Morphological and genetic diversity of diatoms in the Beaufort Sea with high contributions from the Chaetoceros neogracilis species complex. J. Phycol. in press.
  17. Hummel, H., Van Avesaath, P., Wijnhoven, S., Kleine-Schaars, L., Degraer, S., Kerckhof, F., Bojanic, N. et al. 2016. Geographic patterns of biodiversity in European coastal marine benthos. J. Mar. Biol. Assoc. United Kingdom. 1–17.
  18. Lopes dos Santos, A., Tragin, M., Gourvil, P., Noël, M.-H., Decelle, J., Romac, S. & Vaulot, D. 2016. Diversity and oceanic distribution of prasinophytes clade VII, the dominant group of green algae in oceanic waters. ISME J. in press.
  19. Le Gac, M., Metegnier, G., Chomérat, N., Pascale, M., Quéré, J., Bouchez, O., Siano, R. et al. 2016. Evolutionary processes and cellular functions underlying divergence in Alexandrium minutum. Mol. Ecol. in press.
  20. Lu, Y., Wohlrab, S., Groth, M., Glöckner, G., Guillou, L. & John, U. 2016. Transcriptomic profiling of Alexandrium fundyense during physical interaction with or exposure to chemical signals from the parasite Amoebophrya. Mol. Ecol. 25:1294–307.
  21. Gérikas Ribeiro, C., Marie, D., Lopes dos Santos, A., Pereira Brandini, F. & Vaulot, D. 2016. Estimating microbial populations by flow cytometry: Comparison between instruments. Limnol. Oceanogr. Methods. in press.
  22. Marie, D., Le Gall, F., Edern, R., Gourvil, P. & Vaulot, D. 2016. Improvement of phytoplankton culture isolation using single cell sorting by flow cytometry. J. Phycol. in press.
  23. Gérikas Ribeiro, C., Lopes dos Santos, A., Marie, D., Pellizari, V.H., Brandini, F.P. & Vaulot, D. 2016. Pico- and nanoplankton abundance and biomass in the Southwest Atlantic Ocean off Brazil. PeerJ. in press.
  24. Marron, A.O., Ratcliffe, S., Wheeler, G.L., Goldstein, R.E., King, N., Not, F., de Vargas, C. et al. 2016. The Evolution of Silicon Transport in Eukaryotes. Mol. Biol. Evol. msw209.
  25. Blanquart, F., Valero, M., Alves-de-Souza, C., Dia, A., Lepelletier, F., Bigeard, E., Jeanthon, C. et al. 2016. Evidence for parasite-mediated selection during short-lasting toxic algal blooms. Proc. R. Soc. B Biol. Sci. 283:20161870.
  26. Egas, C., Henríquez-Castillo, C., Delherbe, N., Molina, E., Lopes Dos Santos, A., Lavín, P., Iglesia, R.D. la et al. 2016. Size-structure of microbial planktonic communities from Fildes Bay, Antarctica: dominance of nano-phytoplankton during summer 2012. Antarct. Sci. in press.
  27. Vannier, T., Leconte, J., Seeleuthner, Y., Mondy, S., Pelletier, E., Aury, J.-M., de Vargas, C. et al. 2016. Survey of the green picoalga Bathycoccus genomes in the global ocean. Sci. Rep. in press.
  28. Klouch, Z.K., Caradec, F., Plus, M., Hernández-Fariñas, T., Pineau-Guillou, L., Chapelle, A., Schmitt, S. et al. 2016. Heterogeneous distribution in sediments and dispersal in waters of Alexandrium minutum in a semi-enclosed coastal ecosystem. Harmful Algae. 60:81–91.
  29. Husson, B., Hernández-Fariñas, T., Le Gendre, R., Schapira, M. & Chapelle, A. 2016. Two decades of Pseudo-nitzschia spp. blooms and king scallop (Pecten maximus) contamination by domoic acid along the French Atlantic and English Channel coasts: Seasonal dynamics, spatial heterogeneity and interannual variability. Harmful Algae. 51:26–39.

  30. Scholz, B., Guillou, L., Marano, A. V., Neuhauser, S., Sullivan, B.K., Karsten, U., Küpper, F.C. et al. 2016. Zoosporic parasites infecting marine diatoms – A black box that needs to be opened. Fungal Ecol. 19:59–76.


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1. Coupel, P., Matsuoka, A., Ruiz-Pino, D., Gosselin, M., Claustre, H., Marie, D., Tremblay, J. É. & Babin, M. 2014. Pigment signatures of phytoplankton communities in the Beaufort Sea. Biogeosciences Discuss. 11:14489-14530.

2. Decelle, J., Romac, S., Sasaki, E., Not, F. & Mahé, F. 2014. Intracellular Diversity of the V4 and V9 Regions of the 18S rRNA in Marine Protists (Radiolarians) Assessed by High-Throughput Sequencing. PLoS ONE 9:e104297.

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