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Since 28 jan 2005
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Papers
Papers published since 2005 (older papers are available through the Publication list)

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Kimoto, K., Ishimura, T., Tsunogai, U., Itaki, T. Ujiié, Y. 2009. The living triserial planktic foraminifer Gallitellia vivans (Cushman): Distribution, stable isotopes, and paleoecological implications. Marine Micropaleontology 71:71-79.
Keeling, P. J., Burki, F., Wilcox, H. M., Allam, B., Allen, E. E., Amaral-Zettler, L. A., Armbrust, E. V., Archibald, J. M., Bharti, A. K., Bell, C. J., Beszteri, B., Bidle, K. D., Cameron, C. T., Campbell, L., Caron, D. A., Cattolico, R. A., Collier, J. L., Coyne, K., Davy, S. K., Deschamps, P., Dyhrman, S. T., Edvardsen, B., Gates, R. D., Gobler, C. J., Greenwood, S. J., Guida, S. M., Jacobi, J. L., Jakobsen, K. S., James, E. R., Jenkins, B., John, U., Johnson, M. D., Juhl, A. R., Kamp, A., Katz, L. A., Kiene, R., Kudryavtsev, A., Leander, B. S., Lin, S., Lovejoy, C., Lynn, D., Marchetti, A., McManus, G., Nedelcu, A. M., Menden-Deuer, S., Miceli, C., Mock, T., Montresor, M., Moran, M. A., Murray, S., Nadathur, G., Nagai, S., Ngam, P. B., Palenik, B., Pawlowski, J., Petroni, G., Piganeau, G., Posewitz, M. C., Rengefors, K., Romano, G., Rumpho, M. E., Rynearson, T., Schilling, K. B., Schroeder, D. C., Simpson, A. G. B., Slamovits, C. H., Smith, D. R., Smith, G. J., Smith, S. R., Sosik, H. M., Stief, P., Theriot, E., Twary, S. N., Umale, P. E., Vaulot, D., Wawrik, B., Wheeler, G. L., Wilson, W. H., Xu, Y., Zingone, A. Worden, A. Z. 2014. The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing. PLoS Biol 12:e1001889.
Karsenti, E., Acinas, S. G., Bork, P., Bowler, C., De Vargas, C., Raes, J., Sullivan, M., Arendt, D., Benzoni, F., Claverie, J.-M., Follows, M., Gorsky, G., Hingamp, P., Iudicone, D., Jaillon, O., Kandels-Lewis, S., Krzic, U., Not, F., Ogata, H., Pesant, S., Reynaud, E. G., Sardet, C., Sieracki, M. E., Speich, S., Velayoudon, D., Weissenbach, J., Wincker, P. the Tara Oceans, C. 2011. A Holistic Approach to Marine Eco-Systems Biology. PLoS Biol 9:e1001177.
Karlov, D. S., Marie, D., Chuvochina, M. S., Alekhina, I. A. Bulat, S. A. 2011. Microbial communities of water column of lake Radok, East Antartica, dominated by abundant Actinobacterium Candidatus Planktophila limnetica . Microbiology 80:576 - 579.
Jouenne, F., Eikrem, W., Le Gall, F., Johnsen, G. Vaulot, D. 2011. Prasinoderma singularis sp. nov., a solitary coccoid prasinophyte from the South East Pacific Ocean. Protist 162:70-84.
Jouenne, F., Probert, I. Vaulot, D. 2008. Plankton taxonomy in the computer age. Cahiers de Biologie Marine 49:365-367
Jeanthon, C., Boeuf, D., Dahan, O., Le Gall, F., Garczarek, L., Bendif, E. M. Lehours, A.-C. 2011. Diversity of cultivated and metabolically active aerobic anoxygenic phototrophic bacteria along an oligotrophic gradient in the Mediterranean Sea. Biogeosciences 8:1955-1970.
Jacquet, S., Prieur, L., Nival, P. Vaulot, D. 2010. Structure and variability of the microbial community associated to the Alboran Sea frontal system (Western Mediterranean) in winter. Journal of Oceanography, Research and Data 3:47-75.
Ishitani, Y., Ujiié, Y., de Vargas, C., Not, F. Takahashi, K. 2012. Phylogenetic Relationships and Evolutionary Patterns of the Order Collodaria (Radiolaria). PLoS ONE 7:e35775.
Ishitani, Y., Ujiié, Y., de Vargas, C., Not, F. Takahashi, K. 2012. Two distinct lineages in the radiolarian Order Spumellaria having different ecological preferences. Deep Sea Research Part II: Topical Studies in Oceanography in press
Iglesias-Rodriguez, M. D., Halloran, P. R., Rickaby, R. E. M., Hall, I. R., Colmenero-Hidalgo, E., Gittins, J. R., Green, D. R. H., Tyrrell, T., Gibbs, S. J., von Dassow, P., Rehm, E., Armbrust, E. V. Boessenkool, K. P. 2008. Phytoplankton calcification in a high-CO2 world. Science 320:336-340.
Humily, F., Marie, D., Farrant, G., Partensky, F., Mazard, S., Perennou, M., Labadie, K., Aury, J. M., Wincker, P., Nicholas Segui, A., Scanlan, D. J. Garczarek, L. 2014. Use of a targeted metagenomic approach to study in situ diversity of a genomic region involved in light harvesting in marine Synechococcus. FEMS Microbial Ecology 88:231-249.
Humily, F., Partensky, F., Six, C., Farrant, G. K., Ratin, M., Marie, D. Garczarek, L. 2013. A Gene Island with Two Possible Configurations Is Involved in Chromatic Acclimation in Marine Synechococcus. PLoS ONE 8:e84459.
Hubas, C., Jesus, B. M., Passarelli, C. Jeanthon, C. 2011. Tools providing new insight into coastal anoxygenic purple bacterial mats: review and perspectives. Research in Microbiology 162:858-868
file icon Holtzendorff Bioessays 2006hot! 04/13/2006 Hits: 7355
Holtzendorff, J., Reinhardt, J. Viollier, P. H. 2006. Cell cycle control by oscillating regulatory proteins in Caulobacter crescentus. Bioessays 28:355-361.
Hingamp, P., Grimsley, N., Acinas, S. G., Clerissi, C., Subirana, L., Poulain, J., Ferrera, I., Sarmento, H., Villar, E., Lima-Mendez, G., Faust, K., Sunagawa, S., Claverie, J.-M., Moreau, H., Desdevises, Y., Bork, P., Raes, J., de Vargas, C., Karsenti, E., Kandels-Lewis, S., Jaillon, O., Not, F., Pesant, S., Wincker, P. Ogata, H. 2013. Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes. Isme J
Hagino, K., Bendif, E. M., Young, J., Kogame, K., Takano, Y., Probert, I., Horiguchi, T., de Vargas, C. Okada, H. 2011. New evidence for morphological and genetic variation in the cosmopolitan coccolithophore Emiliana huxleyi (prymnesiophyceae) from the cox1b-ATP4 genes. Journal of Phycology 47:1164-1176
file icon Hadas L&O 2006hot! 05/11/2006 Hits: 4469
Hadas, E. Marie, D. 2006. Virus predation by sponges is a new nutrient-flow pathway in coral reef food webs. Limnology and Oceanography 51:1548-1550.
Haberkorn, H., Hégaret, H., Marie, D., Lambert, C. Soudant, P. 2011. Flow cytometric measurements of cellular responses in a toxic dinoflagellate, Alexandrium minutum upon exposure to thermal, chemical and mechanical stresses. Harmful Algae 10:463-471.
Guilloux, L., Rigaut-Jalabert, F., Jouenne, F., Ristori, S., Viprey, M., Not, F., Vaulot, D. Simon, N. 2013. An annotated checklist of Marine Phytoplankton taxa at the SOMLIT-Astan time series off Roscoff (Western Channel, France): data collected from 2000 to 2010. Cahiers de Biologie Marine 54:247-256.
Guillou, L., Bachar, D., Audic, S., Bass, D., Berney, C., Bittner, L., Boutte, C., Burgaud, G., de Vargas, C., Decelle, J., del Campo, J., Dolan, J., Dunthorn, M., Bente, E., Holzmann, M., Kooistra, W. H. C. F., Lara, E., Lebescot, N., Logares, R., Mahé, F., Massana, R., Montresor, M., Morard, R., Not, F., Pawlowski, J., Probert, I., Sauvadet, A.-L., Siano, R., Stoeck, T., Vaulot, D., Zimmermann, P. Christen, R. 2013. The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small SubUnit rRNA sequences with curated taxonomy. Nucleic Acids Research 41:D597-D604.
Guillou, L. 2011. Characterization of the Parmales: much more than the resolution of a taxonomic enigma. Journal of Phycology 47:2-4
Supplementary material for : Guillou, L., Viprey, M., Chambouvet, A., Welsh, R. M., Kirkham, A. R., Massana, R., Scanlan, D. J. Worden, A. Z. 2008. Widespread occurrence and genetic diversity of marine parasitoids belonging to Syndiniales (Alveolata). Environmental Microbiology 10:3349-3365.
Guillou, L., Viprey, M., Chambouvet, A., Welsh, R. M., Kirkham, A. R., Massana, R., Scanlan, D. J. Worden, A. Z. 2008. Widespread occurrence and genetic diversity of marine parasitoids belonging to Syndiniales (Alveolata). Environmental Microbiology 10:3349-3365
Guillou, L., Alves-de-Souza, C., Siano, R. Gonzalez, H. 2010. The ecological significance of small, eukaryotic parasites in marine ecosystems. Microbiology Today May 2010:92-95
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