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Since 28 jan 2005
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Papers
Papers published since 2005 (older papers are available through the Publication list)

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Siano, R., Montresor, M., Probert, I., Not, F. de Vargas, C. 2010. Pelagodinium gen. nov. and P. beii comb. nov., a dinoflagellate symbiont of planktonic foraminifera. Protist 161:385-399.
Feingersch, R., Suzuki, M. T., Shmoish, M., Sharon, I., Sabehi, G., Partensky, F. Beja, O. 2010. Microbial community genomics in eastern Mediterranean Sea surface waters. ISME Journal 4:78-87.
Masquelier, S., Foulon, E., Jouenne, F., Ferréol, M., Brussaard, C. P. D. Vaulot, D. 2011. Distribution of eukaryotic plankton in the English Channel and the North Sea in summer. J. Sea Res. 66:111-122
Mazard, S., Ostrowski, M., Partensky, F. Scanlan, D. J. 2012. Multilocus sequence analysis, taxonomic resolution and biogeography of marine Synechococcus. Environmental Microbiology in press: doi: 10.1111/j.1462-2920.2011.02514.x - pdf (http://www.sb-roscoff.fr/Phyto/index.php?option=com_docman task=doc_download gid=672)
Karlov, D. S., Marie, D., Chuvochina, M. S., Alekhina, I. A. Bulat, S. A. 2011. Microbial communities of water column of lake Radok, East Antartica, dominated by abundant Actinobacterium Candidatus Planktophila limnetica . Microbiology 80:576 - 579.
Collado-Fabri, S., Ulloa, O. Vaulot, D. 2011. Structure and seasonal dynamics of the eukaryotic picophytoplankton community in a wind-driven coastal upwelling ecosystem. Limnology and Oceanography 56:2334-2346
Cermeño, P., de Vargas, C., Abrantes, F. Falkowski, P. G. 2010. Phytoplankton Biogeography and Community Stability in the Ocean. PLoS ONE 5:e10037.
Ishitani, Y., Ujiié, Y., de Vargas, C., Not, F. Takahashi, K. 2012. Two distinct lineages in the radiolarian Order Spumellaria having different ecological preferences. Deep Sea Research Part II: Topical Studies in Oceanography in press
Logares, R., Audic, S., Santini, S., Pernice, M. C., de Vargas, C. Massana, R. 2012. Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing. ISME Journal in press
Bachar, D., Guillou, L. Christen, R. 2012. Detection of introns in eukaryotic small subunit ribosomal RNA gene sequences. Dataset Papers in Bioinformatics doi:
Thompson, A. W., Foster, R. A., Krupke, A., Carter, B. J., Musat, N., Vaulot, D., Kuypers, M. M. M. Zehr, J. P. 2012. Unicellular cyanobacterium symbiotic with a single-celled eukaryotic alga. Science 337:1546-1550. doi: 10.1126/science.1222700 Supplementary material
Decelle, J., Siano, R., Probert, I., Poirier, C. Not, F. 2012. Multiple microalgal partners in symbiosis with the Acantharia Acanthochiasma sp. (Radiolaria). Symbiosis in press:doi: 10.1007/s13199-012-0195-x
Sauvadet, A.-L., Gobet, A. Guillou, L. 2010. Comparative analysis between protist communities from the deep-sea pelagic ecosystem and specific deep hydrothermal habitats. Environmental Microbiology in press - Supplementary material
Hagino, K., Bendif, E. M., Young, J., Kogame, K., Takano, Y., Probert, I., Horiguchi, T., de Vargas, C. Okada, H. 2011. New evidence for morphological and genetic variation in the cosmopolitan coccolithophore Emiliana huxleyi (prymnesiophyceae) from the cox1b-ATP4 genes. Journal of Phycology 47:1164-1176
Boeuf, D., Cottrell, M. T., Kirchman, D. L., Lebaron, P. Jeanthon, C. 2013. Summer community structure of aerobic anoxygenic phototrophic bacteria in the western Arctic Ocean. FEMS Microbiology Ecology in press
Siano, R., Alves-de-Souza, C., Foulon, E., Bendif, E. M., Simon, N., Guillou, L. Not, F. 2011. Distribution and host diversity of Amoebophryidae parasites across oligotrophic waters of the Mediterranean Sea. Biogeoscience 8:267-278.
Zinger, L., Gobet, A. Pommier, T. 2012. Two decades of describing the unseen majority of aquatic microbial diversity. Molecular Ecology 21:1878-1896.
Bougon, N., Aquilina, L., Molénat, J., Marie, D., Delettre, Y., Chancerel, E. Vandenkoornhuyse, P. 2012. Influence of depth and time on diversity of free-living microbial community in the variably saturated zone of a granitic aquifer. FEMS Microbiology Ecology 80:98-113.
Pawlowski, J., Christen, R., Lecroq, B., Bachar, D., Shahbazkia, H. R., Amaral-Zettler, L. Guillou, L. 2011. Eukaryotic richness in the abyss: Insights from pyrotag sequencing. PLoS ONE 6:e18169.
Jacquet, S., Prieur, L., Nival, P. Vaulot, D. 2010. Structure and variability of the microbial community associated to the Alboran Sea frontal system (Western Mediterranean) in winter. Journal of Oceanography, Research and Data 3:47-75.
Ota, S., Kudo, A. Ishida, K. 2011. Gymnochlora dimorpha sp. nov., a chlorarachniophyte with unique daughter cell behaviour. Phycologia 50:317-326.
Guilloux, L., Rigaut-Jalabert, F., Jouenne, F., Ristori, S., Viprey, M., Not, F., Vaulot, D. Simon, N. 2013. An annotated checklist of Marine Phytoplankton taxa at the SOMLIT-Astan time series off Roscoff (Western Channel, France): data collected from 2000 to 2010. Cahiers de Biologie Marine 54:247-256.
Shi, X. L., Lepère, C., Scanlan, D. J. Vaulot, D. 2011. Plastid 16S rRNA gene diversity among eukaryotic picophytoplankton sorted by flow cytometry from the South Pacific Ocean. PLoS ONE 6:e18979.
Roux, S., Enault, F., Bronner, G., Vaulot, D., Forterre, P. Krupovic, M. 2013. Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses. Nature Communications: 4
Aranda, C., Paredes, J., Valenzuela, C., Lam, P. Guillou, L. 2010. 16S rRNA gene-based molecular analysis of mat-forming and accompanying bacteria covering organically-enriched marine sediments underlying a salmon farm in Southern Chile (Calbuco Island). Gayana 74:125-135.
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