Boeuf, D., Cottrell, M. T., Kirchman, D. L., Lebaron, P. Jeanthon, C. 2013. Summer community structure of aerobic anoxygenic phototrophic bacteria in the western Arctic Ocean. FEMS Microbiology Ecology in press

Decelle, J. 2013. New perspectives on the functioning and evolution of photosymbiosis in plankton: mutualism or parasitism? Communicative Integrative Biology 6:e24560.

Guilloux, L., Rigaut-Jalabert, F., Jouenne, F., Ristori, S., Viprey, M., Not, F., Vaulot, D. Simon, N. 2013. An annotated checklist of Marine Phytoplankton taxa at the SOMLIT-Astan time series off Roscoff (Western Channel, France): data collected from 2000 to 2010. Cahiers de Biologie Marine 54:247-256.

Bittner, L., Gobet, A., Audic, S., Romac, S., Egge, E. S., Santini, S., Ogata, H., Probert, I., Edvardsen, B. de Vargas, C. 2012. Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay. Molecular Ecology 22:87-101.

Collén, J., Porcel, B., Carré, W., Ball, S. G., Chaparro, C., Tonon, T., Barbeyron, T., Michel, G., Noel, B., Valentin, K., Elias, M., Artiguenave, F., Arun, A., Aury, J.-M., Barbosa-Neto, J. F., Bothwell, J. H., Bouget, F.-Y., Brillet, L., Cabello-Hurtado, F., Capella-Gutiérrez, S., Charrier, B., Cladière, L., Cock, J. M., Coelho, S. M., Colleoni, C., Czjzek, M., Da Silva, C., Delage, L., Denoeud, F., Deschamps, P., Dittami, S. M., Gabaldón, T., Gachon, C. M. M., Groisillier, A., Hervé, C., Jabbari, K., Katinka, M., Kloareg, B., Kowalczyk, N., Labadie, K., Leblanc, C., Lopez, P. J., McLachlan, D. H., Meslet-Cladiere, L., Moustafa, A., Nehr, Z., Nyvall Collén, P., Panaud, O., Partensky, F., Poulain, J., Rensing, S. A., Rousvoal, S., Samson, G., Symeonidi, A., Weissenbach, J., Zambounis, A., Wincker, P. Boyen, C. 2013. Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida. Proceedings of the National Academy of Sciences 110:5247-5252. 10.1073/pnas.1221259110

Hingamp, P., Grimsley, N., Acinas, S. G., Clerissi, C., Subirana, L., Poulain, J., Ferrera, I., Sarmento, H., Villar, E., Lima-Mendez, G., Faust, K., Sunagawa, S., Claverie, J.-M., Moreau, H., Desdevises, Y., Bork, P., Raes, J., de Vargas, C., Karsenti, E., Kandels-Lewis, S., Jaillon, O., Not, F., Pesant, S., Wincker, P. Ogata, H. 2013. Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes. Isme J

Shukla, A., Biswas, A., Blot, N., Partensky, F., Karty, J., Hammad, L., Garczarek, L., Gutu, A., Schluchter, W. Kehoe, D. 2013. Phycoerythrin-specific bilin lyase–isomerase controls blue-green chromatic acclimation in marine Synechococcus. Proceedings of the National Academy of Sciences of the United States of America 109:20136–20141. doi:10.1073/pnas.1211777109

Bretaudeau, A., Coste, F., Humily, F., Garczarek, L., Le Corguillé, G., Six, L., Ratin, M., Collin, O., Schluchter, W. Partensky, F. 2013. CyanoLyase: a database of phycobilin lyase sequences, motifs and functions. Nucleic Acids Research 41:D396–D401. doi:10.1093/nar/gks1091

Decelle, J., Probert, I., Bittner, L., Desdevises, Y., Colin, S., de Vargas, C., Gali, M., Simo, R. Not, F. 2012. An original mode of symbiosis in open ocean plankton. Proceedings of the National Academy of Sciences of the United States of America 109:18000–18005.

Decelle, J., Siano, R., Probert, I., Poirier, C. Not, F. 2012. Multiple microalgal partners in symbiosis with the Acantharia Acanthochiasma sp. (Radiolaria). Symbiosis in press:doi: 10.1007/s13199-012-0195-x

Decelle, J., Martin, P., Paborstava, K., Pond, D. W., Tarling, G., Mahé, F., de Vargas, C., Lampitt, R. Not, F. 2013. Diversity, Ecology and Biogeochemistry of Cyst-Forming Acantharia (Radiolaria) in the Oceans. PLoS ONE 8:e53598.

Pawlowski, J., Audic, S., Adl, S., Bass, D., Belbahri, L., Berney, C., Bowser, S. S., Cepicka, I., Decelle, J., Dunthorn, M., Fiore-Donno, A. M., Gile, G. H., Holzmann, M., Jahn, R., Jirků, M., Keeling, P. J., Kostka, M., Kudryavtsev, A., Lara, E., Lukeš, J., Mann, D. G., Mitchell, E. A. D., Nitsche, F., Romeralo, M., Saunders, G. W., Simpson, A. G. B., Smirnov, A. V., Spouge, J. L., Stern, R. F., Stoeck, T., Zimmermann, J., Schindel, D. de Vargas, C. 2012. CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms. Plos Biology 10:e1001419.

Coelho, S. M., Simon, N., Ahmed, S., Cock, J. M. Partensky, F. 2013. Ecological and evolutionary genomics of marine photosynthetic organisms. Molecular Ecology 22:867-907.

Kirkham, A. R., Lepere, C., Jardillier, L. E., Not, F., Bouman, H., Mead, A. Scanlan, D. J. 2013. A global perspective on marine photosynthetic picoeukaryote community structure. ISME Journal in press

Bass, D., Yabuki, A., Santini, S., Romac, S. Berney, C. 2012. Reticulamoeba Is a Long-Branched Granofilosean (Cercozoa) That Is Missing from Sequence Databases. PLoS ONE 7:e49090

Sperling, M., Piontek, J., Gerdts, G., Wichels, A., Schunck, H., Roy, A. S., La Roche, J., Gilbert, J., Nissimov, J. I., Bittner, L., Romac, S., Riebesell, U. Engel, A. 2013. Effect of elevated CO2 on the dynamics of particle-attached and free-living bacterioplankton communities in an Arctic fjord. Biogeosciences 10:181-191.

Balzano, S., Gourvil, P., Siano, R., Chanoine, M., Marie, D., Lessard, S., Sarno, D. Vaulot, D. 2012. Diversity of cultured photosynthetic flagellates in the North East Pacific and Arctic Oceans in summer. Biogeosciences 9:4553-4571.

Bulat, S. A., Marie, D. Petit, J. R. 2012. Prospects for live in the subglacial Lake Vostok. Mëd u Chez 4:92-96.

Guillou, L., Bachar, D., Audic, S., Bass, D., Berney, C., Bittner, L., Boutte, C., Burgaud, G., de Vargas, C., Decelle, J., del Campo, J., Dolan, J., Dunthorn, M., Bente, E., Holzmann, M., Kooistra, W. H. C. F., Lara, E., Lebescot, N., Logares, R., Mahé, F., Massana, R., Montresor, M., Morard, R., Not, F., Pawlowski, J., Probert, I., Sauvadet, A.-L., Siano, R., Stoeck, T., Vaulot, D., Zimmermann, P. Christen, R. 2013. The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small SubUnit rRNA sequences with curated taxonomy. Nucleic Acids Research 41:D597-D604.

Not, F., Siano, R., Kooistra, W. H. C. F., Simon, N., Vaulot, D. Probert, I. 2012. Diversity and ecology of eukaryotic marine phytoplankton. In Piganeau, G. [ed.], Genomic insights gained into the Diversity, Biology and Evolution of Microbial Photosynthetic Eukaryotes. Elsevier, p. 1-53.

Thompson, A. W., Foster, R. A., Krupke, A., Carter, B. J., Musat, N., Vaulot, D., Kuypers, M. M. M. Zehr, J. P. 2012. Unicellular cyanobacterium symbiotic with a single-celled eukaryotic alga. Science 337:1546-1550. doi: 10.1126/science.1222700 Supplementary material

Thompson, A. W., Foster, R. A., Krupke, A., Carter, B. J., Musat, N., Vaulot, D., Kuypers, M. M. M. Zehr, J. P. 2012. Unicellular cyanobacterium symbiotic with a single-celled eukaryotic alga. Science 337:1546-1550. doi: 10.1126/science.1222700

Skovgaard, A., Karpov, S. A. Guillou, L. 2012. The parasitic dinoflagellates Blastodinium spp. inhabiting the gut of marine, planktonic copepods: morphology, ecology and unrecognized species diversity. Frontiers in Microbiology 3:305. doi: 10.3389/fmicb.2012.00305

Stern, R. F., Andersen, R. A., Jameson, I., Küpper, F. C., Coffroth, M.-A., Vaulot, D., Gall, F. L., Veron, B., Brand, J. J., Skelton, H., Kasai, F., Lilly, E. L. Keeling, P. J. 2012. Evaluating the ribosomal internal transcribed spacer (ITS) as a candidate dinoflagellate barcode marker. PLoS ONE 7:e42780

Buitenhuis, E. T., Li, W. K. W., Vaulot, D., Lomas, M. W., Landry, M., Partensky, F., Karl, D. M., Ulloa, O., Campbell, L., Jacquet, S., Lantoine, F., Chavez, F., Macias, D., Gosselin, M. McManus, G. B. 2012. Picophytoplankton biomass distribution in the global ocean. Earth System Science Data Discussions 5:221-242.