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Papers published since 2005 (older papers are available through the Publication list)

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Massana, R., del Campo, J., Sieracki, M. E., Audic, S. Logares, R. 2014. Exploring the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles. ISME Journal 8:854-866.
Bendif, E. M., Probert, I., Carmichael, M., Romac, S., Hagino, K. de Vargas, C. 2014. Genetic delineation between and within the widespread coccolithophore morpho-species Emiliania huxleyi and Gephyrocapsa oceanica (Haptophyta). Journal of Phycology 50:140-148
Dunthorn, M., Otto, J., Berger, S., Stamatakis, A., Mahé, F., Romac, S., De Vargas, C., Audic, S., consortium, B., Stock, A., Kauff, F. Stoeck, T. 2014. Placing environmental next generation sequencing amplicons from microbial eukaryotes into a phylogenetic context. Molecular Biology and Evolution in press:
Carrier, G., Garnier, M., Le Cunff, L., Bougaran, G., Probert, I., De Vargas, C., Corre, E., Cadoret, J.-P. Saint-Jean, B. 2014. Comparative Transcriptome of Wild Type and Selected Strains of the Microalgae Tisochrysis lutea Provides Insights into the Genetic Basis, Lipid Metabolism and the Life Cycle. PLoS ONE 9:e86889-e86889.
Maat, D. S., Bale, N. J., Hopmans, E. C., Baudoux, A. C., Sinninghe Damsté, J. S., Schouten, S. Brussaard, C. P. D. 2014. Acquisition of intact polar lipids from the prymnesiophyte Phaeocystis globosa by its lytic virus PgV-07T. Biogeosciences 11:185-194.
Ortega-Retuerta, E., Jeffrey, W. H., Babin, M., Bélanger, S., Benner, R., Marie, D., Matsuoka, A., Raimbault, P. Joux, F. 2012. Carbon fluxes in the Canadian Arctic: patterns and drivers of bacterial abundance, production and respiration on the Beaufort Sea margin. Biogeosciences 9:3679-3692.
Quillévéré, F., Morard, R., Escarguel, G., Douady, C. J., Ujiié, Y., de Garidel-Thoron, T. de Vargas, C. 2013. Global scale same-specimen morpho-genetic analysis of Truncorotalia truncatulinoides: A perspective on the morphological species concept in planktonic foraminifera. Palaeogeography, Palaeoclimatology, Palaeoecology 391:2-12.
Humily, F., Partensky, F., Six, C., Farrant, G. K., Ratin, M., Marie, D. Garczarek, L. 2013. A Gene Island with Two Possible Configurations Is Involved in Chromatic Acclimation in Marine Synechococcus. PLoS ONE 8:e84459.
Morard, R., Quillévéré, F., Escarguel, G., de Garidel-Thoronc, T., de Vargas, C. Kucera, M. 2013. Ecological modeling of the temperature dependence of cryptic species of planktonic foraminifera in the Southern Hemisphere. Palaeogeography, Palaeoclimatology, Palaeoecology 393:13-33.
Pittera, J., Humily, F., Thorel, M., Grulois, D., Garzcarek, L. Six, C. 2014. Connecting thermal physiology and latitudinal niche partitioning in marine Synechococcus. ISME Journal in press
Dia, A., Guillou, L., Mauger, S., Bigeard, E., Marie, D., Valéro, M. Destombe, C. 2014. Spatiotemporal changes in the genetic diversity of harmful algal blooms caused by the toxic dinoflagellate Alexandrium minutum. Molecular Ecology - in press
Lepelletier, F., Karpov, S. A., Le Panse, S., Bigeard, E., Skovgaard, A., Jeanthon, C. Guillou, L. 2014. Parvilucifera rostrata sp. nov., a novel parasite in the phylum Perkinsozoa that infects the toxic dinoflagellate Alexandrium minutum (Dinophyceae). Protist 165:31-49.
Roux, S., Enault, F., Bronner, G., Vaulot, D., Forterre, P. Krupovic, M. 2013. Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses. Nat Commun 4:
Abida, H., Ruchaud, S., Rios, L., Humeau, A., Probert, I., De Vargas, C., Bach, S. Bowler, C. 2013. Bioprospecting Marine Plankton. Marine Drugs 11:4594-4611.
Roux, S., Enault, F., Bronner, G., Vaulot, D., Forterre, P. Krupovic, M. 2013. Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses. Nature Communications: 4
Egge, E., Bittner, L., Andersen, T., Audic, S., de Vargas, C. Edvardsen, B. 2013. 454 Pyrosequencing to Describe Microbial Eukaryotic Community Composition, Diversity and Relative Abundance: A Test for Marine Haptophytes. PLoS ONE 8:e74371.
Logares, R., Sunagawa, S., Salazar, G., Cornejo-Castillo, F. M., Ferrera, I., Sarmento, H., Hingamp, P., Ogata, H., de Vargas, C., Lima-Mendez, G., Raes, J., Poulain, J., Jaillon, O., Wincker, P., Kandels-Lewis, S., Karsenti, E., Bork, P. Acinas, S. G. 2013. Metagenomic 16S rDNA Illumina Tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities. Environmental Microbiology in press
Bendif, E.-m., Al-Kandari, M., Probert, I. Schroeder, D. C. 2013. Microalgae systematics : can we still fit a square peg in a round hole when new evidence says it is a triangle ? The Marine Biologist 1:15-17.
Noisette, F., Duong, G., Six, C., Davoult, D. Martin, S. 2013. Effects of elevated pCO2 on the metabolism of a temperate rhodolith Lithothamnion corallioides grown under different temperatures. Journal of Phycology 49:746-757.
André, A., Weiner, A., Quillévéré, F., Aurahs, R., Morard, R., Douady, C. J., de Garidel-Thoron, T., Escarguel, G., de Vargas, C. Kucera, M. 2013. The cryptic and the apparent reversed: lack of genetic differentiation within the morphologically diverse plexus of the planktonic foraminifer Globigerinoides sacculifer. Paleobiology 39:21-39
Unrein, F., Gasol, J. M., Not, F., Forn, I. Massana, R. 2013. Mixotrophic haptophytes are key bacterial grazers in oligotrophic coastal waters. ISME Journal in press:
Roy, A. S., Gibbons, S. M., Schunck, H., Owens, S., Caporaso, J. G., Sperling, M., Nissimov, J. I., Romac, S., Bittner, L., Mühling, M., Riebesell, U., LaRoche, J. Gilbert, J. A. 2013. Ocean acidification shows negligible impacts on high-latitude bacterial community structure in coastal pelagic mesocosms. Biogeosciences 10:555-566.
del Campo, J., Not, F., Forn, I., Sieracki, M. E. Massana, R. 2013. Taming the smallest predators of the oceans. ISME Journal 7:351-358.
Bougon, N., Aquilina, L., Molénat, J., Marie, D., Delettre, Y., Chancerel, E. Vandenkoornhuyse, P. 2012. Influence of depth and time on diversity of free-living microbial community in the variably saturated zone of a granitic aquifer. FEMS Microbiology Ecology 80:98-113.
Rousseau, V., Lantoine, F., Rodriguez, F., Le Gall, F., Chrétiennot-Dinet, M.-J. Lancelot, C. 2013. Characterization of Phaeocystis globosa (Haptophyceae), the blooming species in the Southern North Sea. Journal of Sea Research 76:105-113.
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